def volumes3d(self, source, dx=0.25, xlo=None, xhi=None, ylo=None, yhi=None, zlo=None, zhi=None, n_soma_step=100):
mesh, surface_areas, volumes, triangles = geometry3d.voxelize2(
source, dx=dx, xlo=xlo, xhi=xhi, ylo=ylo, yhi=yhi, zlo=zlo, zhi=zhi, n_soma_step=n_soma_step
)
surface_areas._values *= self._surface_fraction
volumes._values *= self._volume_fraction
return mesh, surface_areas, volumes, triangles
def volumes3d(self, source, dx=0.25, xlo=None, xhi=None, ylo=None, yhi=None, zlo=None, zhi=None, n_soma_step=100):
mesh, surface_areas, volumes, triangles = geometry3d.voxelize2(
source, dx=dx, xlo=xlo, xhi=xhi, ylo=ylo, yhi=yhi, zlo=zlo, zhi=zhi, n_soma_step=n_soma_step
)
volumes._values *= (
self._area_per_vol
) # volume on 2D boundaries is actually the area; the amount of space for holding things
surface_areas._values *= 0
return mesh, surface_areas, volumes, triangles
def volumes3d(self, source, dx=0.25, xlo=None, xhi=None, ylo=None, yhi=None, zlo=None, zhi=None, n_soma_step=100):
#mesh, surface_areas, volumes, triangles = geometry3d.voxelize2(source, dx=dx)
#surface_areas._values *= self._surface_fraction
#volumes._values *= self._volume_fraction
#return mesh, surface_areas, volumes, triangles
internal_voxels, surface_voxels, mesh_grid = geometry3d.voxelize2(source, dx=dx)
volume_fraction = self._volume_fraction
for key in internal_voxels:
internal_voxels[key][0] *= volume_fraction
for key in surface_voxels:
surface_voxels[key][0] *= volume_fraction
return internal_voxels, surface_voxels, mesh_grid
def volumes3d(self, source, dx=0.25, xlo=None, xhi=None, ylo=None, yhi=None, zlo=None, zhi=None, n_soma_step=100):
#mesh, surface_areas, volumes, triangles = geometry3d.voxelize2(source, dx=dx)
#volumes._values *= self._area_per_vol # volume on 2D boundaries is actually the area; the amount of space for holding things
#surface_areas._values *= 0
#return mesh, surface_areas, volumes, triangles
internal_voxels, surface_voxels, mesh_grid = geometry3d.voxelize2(source, dx=dx)
area_per_vol = self._area_per_vol
for key in internal_voxels:
internal_voxels[key][0] *= area_per_vol
for key in surface_voxels:
surface_voxels[key][0] *= area_per_vol
return internal_voxels, surface_voxels, mesh_grid
def volumes3d(self,
source,
dx=0.25,
xlo=None,
xhi=None,
ylo=None,
yhi=None,
zlo=None,
zhi=None,
n_soma_step=100):
mesh, surface_areas, volumes, triangles = geometry3d.voxelize2(
source,
dx=dx,
xlo=xlo,
xhi=xhi,
ylo=ylo,
yhi=yhi,
zlo=zlo,
zhi=zhi,
n_soma_step=n_soma_step)
surface_areas._values *= self._surface_fraction
volumes._values *= self._volume_fraction
return mesh, surface_areas, volumes, triangles
def volumes3d(self,
source,
dx=0.25,
xlo=None,
xhi=None,
ylo=None,
yhi=None,
zlo=None,
zhi=None,
n_soma_step=100):
mesh, surface_areas, volumes, triangles = geometry3d.voxelize2(
source,
dx=dx,
xlo=xlo,
xhi=xhi,
ylo=ylo,
yhi=yhi,
zlo=zlo,
zhi=zhi,
n_soma_step=n_soma_step)
volumes._values *= self._area_per_vol # volume on 2D boundaries is actually the area; the amount of space for holding things
surface_areas._values *= 0
return mesh, surface_areas, volumes, triangles