#!/usr/bin/env python
# Author Michele Mattioni
# Fri Apr 9 11:35:29 BST 2010
"""Main script to start Neuronvisio"""
from neuronvisio.controls import Controls
import sys
if __name__ == '__main__':
controls = Controls()
if len(sys.argv) == 2:
controls.load(sys.argv[1])
This example comes with NeuronVisio. Cell model taken from the paper: NEURON and Python Hines et al. Frontiers in Neuroinformatics (2009) DOI 10.3389/neuro.11/001.2009 """ from itertools import chain # Importing Neuronvisio from neuronvisio.controls import Controls controls = Controls() # Importing the hoc interpreter from neuron import h # topology soma = h.Section(name='soma') apical = h.Section(name='apical') basilar = h.Section(name='basilar') axon = h.Section(name='axon') apical.connect(soma, 1, 0) basilar.connect(soma, 0, 0) axon.connect(soma, 0, 0) # geometry
#!/usr/bin/python
# Author Michele Mattioni
# Fri Apr 9 11:35:29 BST 2010
"""Main script to start Neuronvisio"""
from neuronvisio.controls import Controls
import sys
if __name__ == '__main__':
controls = Controls()
if len(sys.argv) == 2:
controls.load_hdf(sys.argv[1])
# This example comes with NeuronVisio.
# The model is the ported one from the NeuroML website
# http://www.neuroconstruct.org/samples/index.html#Ex6_CerebellumDemo-N101EA
# You need to compile the hoc file before launching it
# $ nrnivmodl
# Importing Neuronvisio
from neuronvisio.controls import Controls
controls = Controls()
# loading the model
# importing the interview so the GUI does not freeze
# Uncomment this if you want to use also the interview GUI
#import neuron.gui
# Load the script
controls.load("Ex6_CerebellumDemo.hoc")
# Uncomment, or copy paste in the ipython console to record and run our vectors
# Record the voltage for all the sections
#controls.manager.add_all_vecRef('v')
# Initializing also our vectors
#controls.init()
# Run
#controls.run()
#!/usr/bin/env python
# Author Michele Mattioni
# Fri Apr 9 11:35:29 BST 2010
"""Main script to start Neuronvisio"""
from neuronvisio.controls import Controls
import sys
if __name__ == '__main__':
controls = Controls()
if len(sys.argv) == 2:
controls.load(sys.argv[1])
# it.
# The model that I choose is:
# A model of spike initiation in neocortical pyramidal neurons
# Z. F. Mainen, J. Joerges, J. R. Huguenard and T. J. Sejnowski
# Neuron 15, 1427-1439 (1995)
# From the original demo I deleted the synapses and the interview panel for clarity.
# You need to compile the hoc file before launching it
# $ nrnivmodl
# Importing Neuronvisio
from neuronvisio.controls import Controls
controls = Controls()
# Importing hoc interpreter
from neuron import h
# loading the model
# importing the interview so the GUI does not freeze
# Uncomment this if you want to use also the interview GUI
#import neuron.gui
# Load the script
controls.load("demo.hoc")
## Insert an IClamp
st = h.IClamp(0.5, sec=h.soma)