def test_fetch_haxby(tmp_path, request_mocker):
request_mocker.url_mapping[re.compile(
r".*(subj\d).*\.tar\.gz")] = _make_haxby_subject_data
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=str(tmp_path),
subjects=[i],
verbose=0)
# subject_data + (md5 + mask if first subj)
assert request_mocker.url_count == i + 2
assert len(haxby.func) == 1
assert len(haxby.anat) == 1
assert len(haxby.session_target) == 1
assert haxby.mask is not None
assert len(haxby.mask_vt) == 1
assert len(haxby.mask_face) == 1
assert len(haxby.mask_house) == 1
assert len(haxby.mask_face_little) == 1
assert len(haxby.mask_house_little) == 1
assert haxby.description != ''
# subjects with list
subjects = [1, 2, 6]
haxby = func.fetch_haxby(data_dir=str(tmp_path),
subjects=subjects,
verbose=0)
assert len(haxby.func) == len(subjects)
assert len(haxby.mask_house_little) == len(subjects)
assert len(haxby.anat) == len(subjects)
assert haxby.anat[2] is None
assert isinstance(haxby.mask, str)
assert len(haxby.mask_face) == len(subjects)
assert len(haxby.session_target) == len(subjects)
assert len(haxby.mask_vt) == len(subjects)
assert len(haxby.mask_face_little) == len(subjects)
subjects = ['a', 8]
message = "You provided invalid subject id {0} in a list"
for sub_id in subjects:
with pytest.raises(ValueError, match=message.format(sub_id)):
func.fetch_haxby(data_dir=str(tmp_path), subjects=[sub_id])
def test_fetch_haxby():
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=tst.tmpdir, subjects=[i],
verbose=0)
# subject_data + (md5 + mask if first subj)
assert_equal(len(tst.mock_url_request.urls), 1 + 2 * (i == 1))
assert_equal(len(haxby.func), 1)
assert_equal(len(haxby.anat), 1)
assert_equal(len(haxby.session_target), 1)
assert_true(haxby.mask is not None)
assert_equal(len(haxby.mask_vt), 1)
assert_equal(len(haxby.mask_face), 1)
assert_equal(len(haxby.mask_house), 1)
assert_equal(len(haxby.mask_face_little), 1)
assert_equal(len(haxby.mask_house_little), 1)
tst.mock_url_request.reset()
assert_not_equal(haxby.description, '')
# subjects with list
subjects = [1, 2, 6]
haxby = func.fetch_haxby(data_dir=tst.tmpdir, subjects=subjects,
verbose=0)
assert_equal(len(haxby.func), len(subjects))
assert_equal(len(haxby.mask_house_little), len(subjects))
assert_equal(len(haxby.anat), len(subjects))
assert_true(haxby.anat[2] is None)
assert_true(isinstance(haxby.mask, _basestring))
assert_equal(len(haxby.mask_face), len(subjects))
assert_equal(len(haxby.session_target), len(subjects))
assert_equal(len(haxby.mask_vt), len(subjects))
assert_equal(len(haxby.mask_face_little), len(subjects))
subjects = ['a', 8]
message = "You provided invalid subject id {0} in a list"
for sub_id in subjects:
assert_raises_regex(ValueError,
message.format(sub_id),
func.fetch_haxby,
data_dir=tst.tmpdir,
subjects=[sub_id])
def test_fetch_haxby():
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=tst.tmpdir, subjects=[i],
verbose=0)
# subject_data + (md5 + mask if first subj)
assert_equal(len(tst.mock_url_request.urls), 1 + 2 * (i == 1))
assert_equal(len(haxby.func), 1)
assert_equal(len(haxby.anat), 1)
assert_equal(len(haxby.session_target), 1)
assert_true(haxby.mask is not None)
assert_equal(len(haxby.mask_vt), 1)
assert_equal(len(haxby.mask_face), 1)
assert_equal(len(haxby.mask_house), 1)
assert_equal(len(haxby.mask_face_little), 1)
assert_equal(len(haxby.mask_house_little), 1)
tst.mock_url_request.reset()
assert_not_equal(haxby.description, '')
# subjects with list
subjects = [1, 2, 6]
haxby = func.fetch_haxby(data_dir=tst.tmpdir, subjects=subjects,
verbose=0)
assert_equal(len(haxby.func), len(subjects))
assert_equal(len(haxby.mask_house_little), len(subjects))
assert_equal(len(haxby.anat), len(subjects))
assert_true(haxby.anat[2] is None)
assert_true(isinstance(haxby.mask, _basestring))
assert_equal(len(haxby.mask_face), len(subjects))
assert_equal(len(haxby.session_target), len(subjects))
assert_equal(len(haxby.mask_vt), len(subjects))
assert_equal(len(haxby.mask_face_little), len(subjects))
subjects = ['a', 8]
message = "You provided invalid subject id {0} in a list"
for sub_id in subjects:
assert_raises_regex(ValueError,
message.format(sub_id),
func.fetch_haxby,
data_dir=tst.tmpdir,
subjects=[sub_id])
def test_fetch_haxby(tmp_path, request_mocker):
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=str(tmp_path),
subjects=[i],
verbose=0)
# subject_data + (md5 + mask if first subj)
assert len(tst.mock_url_request.urls) == 1 + 2 * (i == 1)
assert len(haxby.func) == 1
assert len(haxby.anat) == 1
assert len(haxby.session_target) == 1
assert haxby.mask is not None
assert len(haxby.mask_vt) == 1
assert len(haxby.mask_face) == 1
assert len(haxby.mask_house) == 1
assert len(haxby.mask_face_little) == 1
assert len(haxby.mask_house_little) == 1
tst.mock_url_request.reset()
assert haxby.description != ''
# subjects with list
subjects = [1, 2, 6]
haxby = func.fetch_haxby(data_dir=str(tmp_path),
subjects=subjects,
verbose=0)
assert len(haxby.func) == len(subjects)
assert len(haxby.mask_house_little) == len(subjects)
assert len(haxby.anat) == len(subjects)
assert haxby.anat[2] is None
assert isinstance(haxby.mask, str)
assert len(haxby.mask_face) == len(subjects)
assert len(haxby.session_target) == len(subjects)
assert len(haxby.mask_vt) == len(subjects)
assert len(haxby.mask_face_little) == len(subjects)
subjects = ['a', 8]
message = "You provided invalid subject id {0} in a list"
for sub_id in subjects:
with pytest.raises(ValueError, match=message.format(sub_id)):
func.fetch_haxby(data_dir=str(tmp_path), subjects=[sub_id])
def test_fetch_haxby():
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=tmpdir, n_subjects=i, verbose=0)
assert_equal(len(mock_url_request.urls), 1 + (i == 1)) # subject_data + md5
assert_equal(len(haxby.func), i)
assert_equal(len(haxby.anat), i)
assert_equal(len(haxby.session_target), i)
assert_equal(len(haxby.mask_vt), i)
assert_equal(len(haxby.mask_face), i)
assert_equal(len(haxby.mask_house), i)
assert_equal(len(haxby.mask_face_little), i)
assert_equal(len(haxby.mask_house_little), i)
mock_url_request.reset()
def test_fetch_haxby():
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=tmpdir, n_subjects=i, verbose=0)
assert_equal(len(mock_url_request.urls),
1 + (i == 1)) # subject_data + md5
assert_equal(len(haxby.func), i)
assert_equal(len(haxby.anat), i)
assert_equal(len(haxby.session_target), i)
assert_equal(len(haxby.mask_vt), i)
assert_equal(len(haxby.mask_face), i)
assert_equal(len(haxby.mask_house), i)
assert_equal(len(haxby.mask_face_little), i)
assert_equal(len(haxby.mask_house_little), i)
mock_url_request.reset()
def test_fetch_haxby():
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=tst.tmpdir, n_subjects=i, verbose=0)
# subject_data + (md5 + mask if first subj)
assert_equal(len(tst.mock_url_request.urls), 1 + 2 * (i == 1))
assert_equal(len(haxby.func), i)
assert_equal(len(haxby.anat), i)
assert_equal(len(haxby.session_target), i)
assert_true(haxby.mask is not None)
assert_equal(len(haxby.mask_vt), i)
assert_equal(len(haxby.mask_face), i)
assert_equal(len(haxby.mask_house), i)
assert_equal(len(haxby.mask_face_little), i)
assert_equal(len(haxby.mask_house_little), i)
tst.mock_url_request.reset()
assert_not_equal(haxby.description, '')
def test_fetch_haxby():
for i in range(1, 6):
haxby = func.fetch_haxby(data_dir=tmpdir, n_subjects=i,
verbose=0)
# subject_data + (md5 + mask if first subj)
assert_equal(len(mock_url_request.urls), 1 + 2 * (i == 1))
assert_equal(len(haxby.func), i)
assert_equal(len(haxby.anat), i)
assert_equal(len(haxby.session_target), i)
assert_true(haxby.mask is not None)
assert_equal(len(haxby.mask_vt), i)
assert_equal(len(haxby.mask_face), i)
assert_equal(len(haxby.mask_house), i)
assert_equal(len(haxby.mask_face_little), i)
assert_equal(len(haxby.mask_house_little), i)
mock_url_request.reset()
assert_not_equal(haxby.description, '')
