def test_eddy_correct2():
filelist, outdir, cwd = create_files_in_directory()
eddy = fsl.EddyCorrect()
# make sure command gets called
yield assert_equal, eddy.cmd, 'eddy_correct'
# test raising error with mandatory args absent
yield assert_raises, ValueError, eddy.run
# .inputs based parameters setting
eddy.inputs.in_file = filelist[0]
eddy.inputs.out_file = 'foo_eddc.nii'
eddy.inputs.ref_num = 100
yield assert_equal, eddy.cmdline, 'eddy_correct %s foo_eddc.nii 100' % filelist[
0]
# .run based parameter setting
eddy2 = fsl.EddyCorrect(in_file=filelist[0],
out_file='foo_ec.nii',
ref_num=20)
yield assert_equal, eddy2.cmdline, 'eddy_correct %s foo_ec.nii 20' % filelist[
0]
# test arguments for opt_map
# eddy_correct class doesn't have opt_map{}
clean_directory(outdir, cwd)
def test_eddy_correct2(create_files_in_directory):
filelist, outdir = create_files_in_directory
eddy = fsl.EddyCorrect()
# make sure command gets called
assert eddy.cmd == 'eddy_correct'
# test raising error with mandatory args absent
with pytest.raises(ValueError):
eddy.run()
# .inputs based parameters setting
eddy.inputs.in_file = filelist[0]
eddy.inputs.out_file = 'foo_eddc.nii'
eddy.inputs.ref_num = 100
assert eddy.cmdline == 'eddy_correct %s foo_eddc.nii 100' % filelist[0]
# .run based parameter setting
eddy2 = fsl.EddyCorrect(
in_file=filelist[0], out_file='foo_ec.nii', ref_num=20)
assert eddy2.cmdline == 'eddy_correct %s foo_ec.nii 20' % filelist[0]