def test_VBRAINSDemonWarp_outputs():
output_map = dict(outputVolume=dict(), outputCheckerboardVolume=dict(), outputDisplacementFieldVolume=dict())
outputs = VBRAINSDemonWarp.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_VBRAINSDemonWarp_outputs():
output_map = dict(outputCheckerboardVolume=dict(),
outputDisplacementFieldVolume=dict(),
outputVolume=dict(),
)
outputs = VBRAINSDemonWarp.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_VBRAINSDemonWarp_inputs():
input_map = dict(
ignore_exception=dict(nohash=True, usedefault=True),
outputPixelType=dict(argstr="--outputPixelType %s"),
medianFilterSize=dict(argstr="--medianFilterSize %s", sep=","),
backgroundFillValue=dict(argstr="--backgroundFillValue %d"),
upperThresholdForBOBF=dict(argstr="--upperThresholdForBOBF %d"),
promptUser=dict(argstr="--promptUser "),
smoothDisplacementFieldSigma=dict(argstr="--smoothDisplacementFieldSigma %f"),
histogramMatch=dict(argstr="--histogramMatch "),
fixedVolume=dict(argstr="--fixedVolume %s..."),
initializeWithDisplacementField=dict(argstr="--initializeWithDisplacementField %s"),
numberOfBCHApproximationTerms=dict(argstr="--numberOfBCHApproximationTerms %d"),
inputPixelType=dict(argstr="--inputPixelType %s"),
minimumMovingPyramid=dict(argstr="--minimumMovingPyramid %s", sep=","),
registrationFilterType=dict(argstr="--registrationFilterType %s"),
upFieldSmoothing=dict(argstr="--upFieldSmoothing %f"),
initializeWithTransform=dict(argstr="--initializeWithTransform %s"),
numberOfHistogramBins=dict(argstr="--numberOfHistogramBins %d"),
minimumFixedPyramid=dict(argstr="--minimumFixedPyramid %s", sep=","),
outputNormalized=dict(argstr="--outputNormalized "),
outputVolume=dict(hash_files=False, argstr="--outputVolume %s"),
outputCheckerboardVolume=dict(hash_files=False, argstr="--outputCheckerboardVolume %s"),
movingVolume=dict(argstr="--movingVolume %s..."),
max_step_length=dict(argstr="--max_step_length %f"),
fixedBinaryVolume=dict(argstr="--fixedBinaryVolume %s"),
args=dict(argstr="%s"),
weightFactors=dict(argstr="--weightFactors %s", sep=","),
numberOfThreads=dict(argstr="--numberOfThreads %d"),
movingBinaryVolume=dict(argstr="--movingBinaryVolume %s"),
neighborhoodForBOBF=dict(argstr="--neighborhoodForBOBF %s", sep=","),
outputDisplacementFieldVolume=dict(hash_files=False, argstr="--outputDisplacementFieldVolume %s"),
makeBOBF=dict(argstr="--makeBOBF "),
checkerboardPatternSubdivisions=dict(argstr="--checkerboardPatternSubdivisions %s", sep=","),
seedForBOBF=dict(argstr="--seedForBOBF %s", sep=","),
outputDisplacementFieldPrefix=dict(argstr="--outputDisplacementFieldPrefix %s"),
numberOfPyramidLevels=dict(argstr="--numberOfPyramidLevels %d"),
gui=dict(argstr="--gui "),
outputDebug=dict(argstr="--outputDebug "),
interpolationMode=dict(argstr="--interpolationMode %s"),
use_vanilla_dem=dict(argstr="--use_vanilla_dem "),
terminal_output=dict(mandatory=True, nohash=True),
environ=dict(nohash=True, usedefault=True),
lowerThresholdForBOBF=dict(argstr="--lowerThresholdForBOBF %d"),
numberOfMatchPoints=dict(argstr="--numberOfMatchPoints %d"),
gradient_type=dict(argstr="--gradient_type %s"),
arrayOfPyramidLevelIterations=dict(argstr="--arrayOfPyramidLevelIterations %s", sep=","),
)
inputs = VBRAINSDemonWarp.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_VBRAINSDemonWarp_inputs():
input_map = dict(args=dict(argstr='%s',
),
arrayOfPyramidLevelIterations=dict(argstr='--arrayOfPyramidLevelIterations %s',
sep=',',
),
backgroundFillValue=dict(argstr='--backgroundFillValue %d',
),
checkerboardPatternSubdivisions=dict(argstr='--checkerboardPatternSubdivisions %s',
sep=',',
),
environ=dict(nohash=True,
usedefault=True,
),
fixedBinaryVolume=dict(argstr='--fixedBinaryVolume %s',
),
fixedVolume=dict(argstr='--fixedVolume %s...',
),
gradient_type=dict(argstr='--gradient_type %s',
),
gui=dict(argstr='--gui ',
),
histogramMatch=dict(argstr='--histogramMatch ',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
initializeWithDisplacementField=dict(argstr='--initializeWithDisplacementField %s',
),
initializeWithTransform=dict(argstr='--initializeWithTransform %s',
),
inputPixelType=dict(argstr='--inputPixelType %s',
),
interpolationMode=dict(argstr='--interpolationMode %s',
),
lowerThresholdForBOBF=dict(argstr='--lowerThresholdForBOBF %d',
),
makeBOBF=dict(argstr='--makeBOBF ',
),
max_step_length=dict(argstr='--max_step_length %f',
),
medianFilterSize=dict(argstr='--medianFilterSize %s',
sep=',',
),
minimumFixedPyramid=dict(argstr='--minimumFixedPyramid %s',
sep=',',
),
minimumMovingPyramid=dict(argstr='--minimumMovingPyramid %s',
sep=',',
),
movingBinaryVolume=dict(argstr='--movingBinaryVolume %s',
),
movingVolume=dict(argstr='--movingVolume %s...',
),
neighborhoodForBOBF=dict(argstr='--neighborhoodForBOBF %s',
sep=',',
),
numberOfBCHApproximationTerms=dict(argstr='--numberOfBCHApproximationTerms %d',
),
numberOfHistogramBins=dict(argstr='--numberOfHistogramBins %d',
),
numberOfMatchPoints=dict(argstr='--numberOfMatchPoints %d',
),
numberOfPyramidLevels=dict(argstr='--numberOfPyramidLevels %d',
),
numberOfThreads=dict(argstr='--numberOfThreads %d',
),
outputCheckerboardVolume=dict(argstr='--outputCheckerboardVolume %s',
hash_files=False,
),
outputDebug=dict(argstr='--outputDebug ',
),
outputDisplacementFieldPrefix=dict(argstr='--outputDisplacementFieldPrefix %s',
),
outputDisplacementFieldVolume=dict(argstr='--outputDisplacementFieldVolume %s',
hash_files=False,
),
outputNormalized=dict(argstr='--outputNormalized ',
),
outputPixelType=dict(argstr='--outputPixelType %s',
),
outputVolume=dict(argstr='--outputVolume %s',
hash_files=False,
),
promptUser=dict(argstr='--promptUser ',
),
registrationFilterType=dict(argstr='--registrationFilterType %s',
),
seedForBOBF=dict(argstr='--seedForBOBF %s',
sep=',',
),
smoothDisplacementFieldSigma=dict(argstr='--smoothDisplacementFieldSigma %f',
),
terminal_output=dict(mandatory=True,
nohash=True,
),
upFieldSmoothing=dict(argstr='--upFieldSmoothing %f',
),
upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d',
),
use_vanilla_dem=dict(argstr='--use_vanilla_dem ',
),
weightFactors=dict(argstr='--weightFactors %s',
sep=',',
),
)
inputs = VBRAINSDemonWarp.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value