from nipype.interfaces.base import traits
mlab.MatlabCommand.set_default_matlab_cmd(os.getenv("MATLABCMD", "matlab"))
def test_scan_for_fnames(create_files_in_directory):
filelist, outdir = create_files_in_directory
names = spm.scans_for_fnames(filelist, keep4d=True)
assert names[0] == filelist[0]
assert names[1] == filelist[1]
save_time = False
if not save_time:
@pytest.mark.skipif(no_spm(), reason="spm is not installed")
def test_spm_path():
spm_path = spm.Info.path()
if spm_path is not None:
assert isinstance(spm_path, (str, bytes))
assert "spm" in spm_path.lower()
def test_use_mfile():
class TestClass(spm.SPMCommand):
input_spec = spm.SPMCommandInputSpec
dc = TestClass() # dc = derived_class
assert dc.inputs.mfile
def test_normalize12():
assert spm.Normalize12._jobtype == 'spatial'
assert spm.Normalize12._jobname == 'normalise'
assert spm.Normalize12().inputs.jobtype == 'estwrite'
def test_normalize12_list_outputs(create_files_in_directory):
filelist, outdir = create_files_in_directory
norm12 = spm.Normalize12(image_to_align=filelist[0])
assert norm12._list_outputs()['normalized_image'][0].startswith('w')
norm12 = spm.Normalize12(
image_to_align=filelist[0], apply_to_files=filelist[1])
assert norm12._list_outputs()['normalized_files'][0].startswith('w')
@pytest.mark.skipif(no_spm(), reason="spm is not installed")
def test_segment():
if spm.Info.name() == "SPM12":
assert spm.Segment()._jobtype == 'tools'
assert spm.Segment()._jobname == 'oldseg'
else:
assert spm.Segment()._jobtype == 'spatial'
assert spm.Segment()._jobname == 'preproc'
@pytest.mark.skipif(no_spm(), reason="spm is not installed")
def test_newsegment():
if spm.Info.name() == "SPM12":
assert spm.NewSegment()._jobtype == 'spatial'
assert spm.NewSegment()._jobname == 'preproc'
else: