def test_nerdm_record_withannots(self):
self.bag = bag.NISTBag(metabagdir)
nerd = self.bag.nerdm_record()
self.assertNotIn('authors', nerd)
self.assertTrue(nerd['title'].startswith("OptSortSph: Sorting "))
self.assertEqual(nerd['ediid'], "3A1EE2F169DD3B8CE0531A570681DB5D1491")
self.assertEqual(nerd['@type'], ["nrdp:PublicDataResource"])
trial1 = [
c for c in nerd['components']
if 'filepath' in c and c['filepath'] == "trial1.json"
][0]
self.assertNotIn('previewURL', trial1)
nerd = self.bag.nerdm_record(True)
self.assertIn('authors', nerd)
self.assertTrue(nerd['title'].startswith("OptSortSph: Sorting "))
self.assertEqual(nerd['ediid'], "3A1EE2F169DD3B8CE0531A570681DB5D1491")
self.assertEqual(nerd['authors'][0]['givenName'], "Kevin")
self.assertEqual(nerd['authors'][1]['givenName'], "Jianming")
self.assertEqual(len(nerd['authors']), 2)
self.assertEqual(nerd['@type'],
["nrdp:DataPublication", "nrdp:PublicDataResource"])
trial1 = [
c for c in nerd['components']
if 'filepath' in c and c['filepath'] == "trial1.json"
][0]
self.assertIn('previewURL', trial1)
self.assertTrue(trial1['previewURL'].endswith("trial1.json/preview"))
def test_nerd_metadata_for_withannots(self):
self.bag = bag.NISTBag(metabagdir)
nerd = self.bag.nerd_metadata_for("")
self.assertNotIn('authors', nerd)
self.assertNotIn('foo', nerd)
self.assertTrue(nerd['title'].startswith("OptSortSph: Sorting "))
self.assertEqual(nerd['ediid'], "3A1EE2F169DD3B8CE0531A570681DB5D1491")
self.assertEqual(nerd['@type'], ["nrdp:PublicDataResource"])
nerd = self.bag.nerd_metadata_for("", True)
self.assertIn('authors', nerd)
self.assertTrue(nerd['title'].startswith("OptSortSph: Sorting "))
self.assertEqual(nerd['ediid'], "3A1EE2F169DD3B8CE0531A570681DB5D1491")
self.assertIn('foo', nerd)
self.assertIn(nerd['foo'], "bar")
self.assertEqual(nerd['authors'][0]['givenName'], "Kevin")
self.assertEqual(nerd['authors'][1]['givenName'], "Jianming")
self.assertEqual(len(nerd['authors']), 2)
self.assertEqual(nerd['@type'],
["nrdp:DataPublication", "nrdp:PublicDataResource"])
nerd = self.bag.nerd_metadata_for("trial1.json")
self.assertNotIn("previewURL", nerd)
self.assertTrue(nerd['title'].startswith("JSON version of"))
nerd = self.bag.nerd_metadata_for("trial1.json", True)
self.assertIn("previewURL", nerd)
self.assertTrue(nerd['title'].startswith("JSON version of"))
self.assertTrue(nerd['previewURL'].endswith("trial1.json/preview"))
def setUp(self):
self.tf = Tempfiles()
self.bagdir = self.tf.track("mbag")
shutil.copytree(bagdir, self.bagdir)
self.bag = bag.NISTBag(self.bagdir)
self.valid8 = val.BagItValidator()
def setUp(self):
self.tf = Tempfiles()
self.bagdir = self.tf.track("mbag")
shutil.copytree(bagdir, self.bagdir)
self.bag = bag.NISTBag(self.bagdir)
mbtagf = os.path.join(self.bag.multibag_dir, "member-bags.tsv")
with open(mbtagf, 'w') as fd:
print(self.bag.name, file=fd)
mbtagf = os.path.join(self.bag.multibag_dir, "file-lookup.tsv")
nmre = re.compile(r'samplebag')
with open(mbtagf) as fd:
lines = fd.readlines()
with open(mbtagf, 'w') as fd:
for line in lines:
fd.write(nmre.sub(self.bag.name, line))
self.valid8 = val.MultibagValidator()
def setUp(self):
self.tf = Tempfiles()
self.bagdir = self.tf.track("XXXX.mbag0_2-0")
shutil.copytree(bagdir, self.bagdir)
self.bag = bag.NISTBag(self.bagdir)
mbtagf = os.path.join(self.bag.multibag_dir, "group-members.txt")
with open(mbtagf, 'w') as fd:
print(self.bag.name, file=fd)
mbtagf = os.path.join(self.bag.multibag_dir, "group-directory.txt")
nmre = re.compile(r'samplebag')
with open(mbtagf) as fd:
lines = fd.readlines()
with open(mbtagf, 'w') as fd:
for line in lines:
fd.write(nmre.sub(self.bag.name, line))
config = {
"nerdm_schema_dir": schemadir,
}
self.valid8 = val.NISTBagValidator(config)
def setUp(self):
self.bag = bag.NISTBag(bagdir)