def build_config(path, request):
"Tries to build the config dictionary for the given path"
try:
config = parsing.initial(getabspath(path))
except:
logger.exception(
"Error parsing gbk: %r", getabspath(path, raise_on_missing=False))
raise
parsing.detect_format(config)
for k in VALID_KEYS:
v = request.GET.get(k)
if v:
nv = parsing.number(v)
config[k] = v if nv is None else nv
parsing.endBase(config)
# fixup nucleotides list
if 'nucleotides' in request.GET:
logger.info("nucleotides: %r", request.GET.getlist('nucleotides'))
config['nucleotides'] = request.GET.getlist('nucleotides')
for key in MAGIC_PARAMS:
if key in request.GET:
config[key] = request.GET[key]
return config
def run_status(request, jobid):
"This checks on the status of jobid"
result = {'tid': jobid}
status = 200
try:
abspath = getabspath(jobid, raise_on_missing=False)
# Task IDs == filenames on disk, if the file exists don't even
# bother to check with the server
if os.path.exists(abspath):
result['ready'] = True
elif client.ready(abspath):
result['ready'] = True
# Ensure the task finished correctly
client.result(abspath)
else:
result['ready'] = False
except NoSuchTaskError:
result['message'] = 'Unknown task identifier.'
status = 404
except Exception as e:
result['message'] = 'Fatal error.'
result['exception'] = str(e)
status = 500
logger.exception("Error getting job status. %r", jobid)
return HttpResponse(json.dumps(result),
status=status, content_type="application/json")
def acgt_gamma_file_list(request, acgt_gamma_output):
acgt_gamma_output = getabspath(acgt_gamma_output)
files = map(getrelpath, acgt_gamma_output.listdir())
return HttpResponse(json.dumps(files),
status=200, content_type="application/json")