def test_scarr(self):
inp = np.array([np.arange(100), np.arange(100, 200)]).reshape(100, 2)
inp95 = scarr(inp, "sig95")
inpwt = scarr(inp, "whiten")
aequal(inp95[:, 0], inp95[:, 1])
equal(inp95[1, 1], 0.0105715990067)
assert (inpwt[:, 0] - inpwt[:, 1] < 0).all()
def test_loadarr(self):
k, a = load_arr(os.path.join(pkg_dir, "data", "test_ab_cnt.arr"))
assert k[0] == "dnase:a"
aequal(a[0], [
0., 2., 1., 2., 0., 0., 0., 12., 0., 2., 0., 2., 0., 0., 0., 0.,
0., 0., 0., 1., 1., 1., 1., 0.
])
def test_scarr(self):
inp = np.array([np.arange(100),
np.arange(100, 200)]).reshape(100,2)
inp95 = scarr(inp, "sig95")
inpwt = scarr(inp, "whiten")
aequal(inp95[:,0], inp95[:,1])
equal(inp95[1,1], 0.0105715990067)
assert (inpwt[:,0] - inpwt[:,1] < 0).all()
def test_loadarr(self):
k,a = load_arr(os.path.join(pkg_dir, "data", "test_ab_cnt.arr"))
assert k[0] == "dnase:a"
aequal(a[0], [0.,2.,1.,2.,0.,0.,0.,12.,0.,2.,0.,2.,0.,0.,0.,0.,0.,0.,0.,1.,1.,1.,1.,0.])