def get_data(self):
# initial condition is v=0 and x=0
curr_state = np.array([[0] , [0]])
# input and measurement at start at timestep 1 since KF starts at timestep 1
vtr = np.zeros((1,self.control_inputs.size))
xtr = np.zeros((1,self.control_inputs.size))
measurements = np.zeros((1,self.control_inputs.size))
# updates begin at timestep 1 since timestep 0 is the initial state
for i in range(1, self.control_inputs.size):
c_input = self.control_inputs[0 , i]
c_input = np.reshape(c_input, (1,1))
# get the next state from the control input
next_state = mm(self.A, curr_state) + \
mm(self.B, c_input) + \
self.make_process_noise()
# save the ground truth state (v and x)
vtr[0 , i] = next_state[0 , 0]
xtr[0 , i] = next_state[1 , 0]
# save the measurement
measurements[0 , i] = \
(mm(self.C, next_state) + self.make_measurement_noise())
curr_state = next_state
return vtr, xtr, measurements
def train_XCubed(W, dataset, patchshape, batch_size, iterations):
for i in range(iterations):
batch = get_batch(X, patchshape, batch_size=batch_size)
W = normalize_columns(W)
a = 0.5 * normalize_columns(mm(W.T, batch))**3
W += mm((batch - mm(W, a)), a.T)
return W
def get_G_t(v, w, angle, dt, F_x_matrix):
ratio = v/w
a = np.array([
[0, 0, ( -ratio*cos(angle) ) + ( ratio*cos(angle + (w*dt)) ) ],
[0, 0, ( -ratio*sin(angle) ) + ( ratio*sin(angle + (w*dt)) ) ],
[0, 0, 0]
])
a = mm(mm(np.transpose(F_x_matrix), a), F_x_matrix)
return np.identity(a.shape[0]) + a
def calculate_w(reg, x, y): d = x.shape[1] covar = mm(tp(x),x ) lambdai = np.diag( np.ones(d)*reg ) addedmatrix = lambdai + covar inverse = inv(addedmatrix) rightside = mm(tp(x), y) w = mm(inverse,rightside) return w
def get_batch(X, patchshape, batch_size=200):
ix = randint(0, X.shape[1] - patchshape[0])
iy = randint(0, X.shape[2] - patchshape[1])
iz = randint(0, X.shape[3] -
patchshape[2]) if patchshape[2] != X.shape[3] else 0
B = X[randint(0, X.shape[0], size=batch_size), ix:ix + patchshape[0],
iy:iy + patchshape[1], iz:iz + patchshape[2]].reshape(
batch_size, patchshape[0] * patchshape[1] * patchshape[2])
B = B.T
B = B - np.mean(B, axis=0)
U, S, V = svd(mm(B, B.T))
ZCAMatrix = mm(U, mm(np.diag(1.0 / np.sqrt(S + 1e-5)), U.T))
B = mm(B, ZCAMatrix)
return B
def animate(i):
for j in range(len(lm_uncertanties)):
x_lm = lm_pred_x[j, i]
y_lm = lm_pred_y[j, i]
if (x_lm == 0) and (y_lm == 0):
# haven't seen landmark yet
continue
# http://anuncommonlab.com/articles/how-kalman-filters-work/part3.html#ellipses
sigma = lm_pred_uncertainty[j][:, :, i]
U, S, _ = np.linalg.svd(sigma)
C = U * 2 * np.sqrt(S)
theta = np.linspace(0, 2 * np.pi, 100)
circle = np.array([cos(theta), sin(theta)])
e = mm(C, circle)
e[0, :] += x_lm
e[1, :] += y_lm
lm_uncertanties[j].set_data(e[0, :], e[1, :])
actual_path.set_data(x_tr[:i + 1], y_tr[:i + 1])
pred_path.set_data(mu_x[:i + 1], mu_y[:i + 1])
heading.set_data([x_tr[i], x_tr[i] + radius * cos(th_tr[i])],
[y_tr[i], y_tr[i] + radius * sin(th_tr[i])])
particles.set_data(pose_particles[0, :, i], pose_particles[1, :, i])
robot.center = (x_tr[i], y_tr[i])
vision_beam.set_center((x_tr[i], y_tr[i]))
vision_beam.theta1 = np.rad2deg(th_tr[i] - fov_bound)
vision_beam.theta2 = np.rad2deg(th_tr[i] + fov_bound)
return (actual_path, pred_path, heading, particles, robot, vision_beam) \
+ tuple(lm_uncertanties)
def matmul(input1, input2): #입력받은 행렬의 행렬 곱 함수
if len(input1) and len(input2) and len(input1[0]) and len(
input2[0]) == 2: # 2x2 행렬이 맞는지 판단
mat_ver = [[cul for cul in v] for v in zip(*input2)]
result = [[
input1[n][0] * mat_ver[0][0] + input1[n][1] * mat_ver[0][1],
input1[n][0] * mat_ver[1][0] + input1[n][1] * mat_ver[1][1]
] for n in [0, 1]] #8주차 과제에서 만든 2x2행렬 곱 함수 code
print('2x2 두 행렬의 곱은 ', result, '입니다.') #8주차에서 만든 함수로 구한 2x2 두 행렬의 곱셈 값
else:
print('2x2행렬의 곱이 아닙니다.')
try:
result = mm(input1, input2) #행렬 곱
print('두 행렬의 곱은 ', '\n', result, '입니다.') #결과 출력
except Exception: #결과 안나오는 예외 경우
print('MatrixValueError')
print('곱하려는 두 행렬의 형식을 확인 후 다시 시도해주세요.')
else:
return result #두 행렬의 곱 값 반환
def low_variance_sampler(chi):
# don't need the weights on the new particles
new_particles = np.zeros((chi.shape[0] - 1, chi.shape[1]))
saved_particle_indices = []
M = chi.shape[1]
r = random.uniform(0, 1 / M)
c = chi[-1, 0] # the first weight
i = 0
for m in range(M):
U = r + m * (1 / M)
while U > c:
i += 1
c += chi[-1, i]
new_particles[:, m] = chi[:-1, i]
saved_particle_indices.append(i)
# dealing with particle deprivation (not in the original algorithm)
P = np.cov(chi[:-1, :])
uniq = np.unique(
saved_particle_indices).size # num. of unique particles in resampling
if (uniq / M) < .025: # if we don't have much variety in our resampling
Q = P / ((M * uniq)**(1 / new_particles.shape[0]))
new_particles += mm(Q, randn(size=new_particles.shape))
return new_particles
def fitness(expander):
correct = mm(
np.arange(1, expander.shape[0] + 1).reshape(expander.shape[0], 1),
np.ones((1, expander.shape[1])))
sorted_map = np.sort(expander, axis=0)
fit = sum(sum(np.abs(sorted_map - correct)))
return fit
def get_mu_bar(prev_mu, v, w, angle, dt, F_x_matrix):
ratio = v/w
m = np.array([
[(-ratio * sin(angle)) + (ratio * sin(angle + (w*dt)))],
[(ratio * cos(angle)) - (ratio * cos(angle + (w*dt)))],
[w*dt]
])
return prev_mu + mm(np.transpose(F_x_matrix), m)
def sn(alpha, beta, x): d = x.shape[1] alphamat = np.diag( np.ones(d)*alpha ) betamat = beta * mm(tp(x),x) add = alphamat + betamat sn = inv(add) return sn
def __fit_dff_elm(self, X, y, elm):
assert elm.beta is not None
assert elm.input_weight is not None
assert elm.covariance_matrix is not None
H = self.__sig_activation_function(X, elm)
H_t = H.transpose()
ep = y - mm(H, elm.beta)
ks = mm(mm(H, elm.covariance_matrix), H_t)
pp = (mm(elm.covariance_matrix, H_t) / (1 + ks)) * ep
elm.beta += pp
# Updating other parameters
if ks > 0:
eps = elm.l - (1 - elm.l) / ks
elm.covariance_matrix -= mm(
mm(mm(elm.covariance_matrix, H_t),
H), elm.covariance_matrix) / (np.linalg.inv(eps) + ks)
elm.la = elm.l * (elm.la + (ep * ep) / (1 + ks))
elm.ny = elm.l * (elm.ny + 1)
te = (ep * ep) / elm.la
elm.l = 1 / (1 + (1 + elm.ro) * (np.log(1 + ks) +
((((elm.ny + 1) * te) /
(1 + ks + te)) - 1) * (ks /
(1 + ks))))
def calculate_mse(w, x, y): n = x.shape[0] postweights = mm(x,w) errorvector = postweights - y squarederror = np.square(errorvector) mse = np.mean(squarederror) return mse
def get_mu_and_sig_bar(dimensionality_bound, w_m, w_c, chi_b_x):
new_bel = np.zeros((3, 1))
for pt in range(dimensionality_bound):
new_bel += w_m[0, pt] * np.reshape(chi_b_x[:, pt], new_bel.shape)
new_sig = np.zeros((3, 3))
for pt in range(dimensionality_bound):
state_diff = np.reshape(chi_b_x[:, pt], new_bel.shape) - new_bel
new_sig += w_c[0, pt] * mm(state_diff, np.transpose(state_diff))
return new_bel, new_sig
def gaussian(x, mu, sigma):
"""
Arguments:
- x: (m, n)
- mu: (n)
- sigma :(n, n)
"""
from numpy.linalg import pinv, det
from numpy import matmul as mm
from numpy import pi, sqrt, power, exp
m, n = x.shape
# reshape for convenience
# x (m, n, 1) mu (n, 1)
x = x[:, :, None]
mu = mu[:, None]
x_T = x.transpose(0, 2, 1)
mu_T = mu.T
# (m, 1, 1) -> (m)
term = -0.5 * mm(x_T - mu_T, mm(pinv(sigma), x - mu))[:, 0, 0]
return (1 / (power(2 * pi, n / 2) * sqrt(det(sigma))) * exp(term))
def __init__(self, ts, M=None):
self.data=ts
if M is None:
M=int(len(ts)/4.0)
self.M = M
N=len(ts)
self.N = N
# create M dimensional phase spaces
X = np.zeros([M,N-M+1])
X_norm = np.zeros([M,N-M+1])
for i in range(M):
X[i,:] = ts[i:(N-M+1+i)]
X_norm[i,:] = X[i,:] - np.mean(X[i,:])
self.trajectory = X
# AUTO COVARIANCE MATRIX
self.R = mm(X_norm, tp(X_norm)) / (N-M+1)
self.cov = np.cov(X)
# eigen stuff, Principal components
self.evals, self.evecs = npla.eig(self.R)
self.PC = mm(tp(self.evecs), X_norm)
# scale this to unbias it, convolution end points are based on fewer additions
RC=np.zeros([M,N])
for col in range(M):
# use convolution to get reconstructed components
RCconv = np.convolve(self.PC[:,col],self.evecs)
if col<M-1:
RC[:,col]=RCconv/float(col)
elif col<N-M+1:
RC[:,col]=RCconv/float(M)
elif col<N:
RC[:,col]=RCconv/float(N-col+1)
self.RC=RC
assert (np.sum(np.abs(np.sum(RC,axis=0) - ts)) < 0.001).all(), "Reconstruction failed"
def getUpdatedCovariance(I, K, H, P):
res = mm(K, H)
res = I - res
res = mm(res, P)
return res
def getUpdate(K, y):
return mm(K, y)
def getInnovation(z, H, x):
return z - mm(H, x)
def getKGain(P, H, S):
res = mm(P, transpose(H))
res = mm(res, la.pinv(S))
return res
def getNewX(A, x):
return mm(A, x)
def normalize_columns(X):
return mm(X, np.diag(1. / (np.sqrt(np.sum(a**2, axis=0)) + 1e-6)))
Batch_size = 64 # Batch size
Q = 1000 # Input size
S = 100 # Number of neurons
a = 10 # Network output size
# ----------------------------------------------------------------------------
a0 = torch.randn(Batch_size, Q, device=device, dtype=dtype)
t = torch.randn(Batch_size, a, device=device, dtype=dtype)
# ----------------------------------------------------------------------------
w1 = torch.randn(Q, S, device=device, dtype=dtype)
w2 = torch.randn(S, a, device=device, dtype=dtype)
learning_rate = 1e-6
# ----------------------------------------------------------------------------
for index in range(10):
n1 = (w1 * a0[index])
a1 = n1 if n1 > 0 else 0
n2 = np.mm(w2.t, a1)
a2 = n2
loss = (a2 - t).pow(2).sum()
print(index, loss)
# h = p.mm(w1) #### Matmul
# h_relu = h.clamp(min=0) ### Clamps everything to min of
# a_net = h_relu.mm(w2) #Purelin output
# loss = (a_net - t).pow(2).sum()
# print(index, loss)
grad_y_pred = 2.0 * (a2 - t)
grad_w2 = a2.t().m, (grad_y_pred) ## .t() flips a 2D array
grad_h_relu = grad_y_pred.mm(w2.t())
grad_h = grad_h_relu.clone()
def main():
# Independent material properties for Scotchply 1002 in US units
E11 = 5.6 * (10**6) # psi
E22 = 1.2 * (10**6) # psi
V12 = 0.26 # unit-less
V21 = (V12 * E22) / E11 # unit-less
G12 = 0.6 * (10**6) # psi
# Typical strengths of Scotchply 1002 in US units
SLt = 154 * (10**3) # psi
SLc = 88.5 * (10**3) # psi
STt = 4.5 * (10**3) # psi
STc = 17.1 * (10**3) # psi
SLTs = 10.4 * (10**3) # psi
# Tsai-Wu Coefficients
F11 = 1 / (SLt * SLc)
F22 = 1 / (STt * STc)
F12 = (-1 / 2) * math.sqrt(F11 * F22)
F66 = 1 / (SLTs**2)
F1 = (1 / SLt) - (1 / SLc)
F2 = (1 / STt) - (1 / STc)
# [Nxx, Nyy, Nxy, Mxx, Myy, Mxy] in lb/in & in-lb/in
stress_resultant = np.array([[1000], [0], [0], [0], [0], [0]])
# Enter a desired ply orientation angles in degrees here:
angle_in_degrees = [
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 45, -45, 90, 90, 90,
90, -45, 45, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
]
# angle_in_degrees = [0,0,0,0,0,0,0,0,0,0,0,0,45,-45,45,-45,45,-45,90,90,90,90,-45,45,-45,45,-45,45,0,0,0,0,0,0,0,0,0,0,0,0]
# angle_in_degrees = [0,0,0,0,0,0,0,0,0,0,45,-45,45,-45,45,-45,45,-45,90,90,90,90,-45,45,-45,45,-45,45,-45,45,0,0,0,0,0,0,0,0,0,0]
# angle_in_degrees = [0,0,0,0,0,0,0,0,45,-45,45,-45,45,-45,45,-45,45,-45,90,90,90,90,-45,45,-45,45,-45,45,-45,45,-45,45,0,0,0,0,0,0,0,0]
# angle_in_degrees = [0,0,0,0,0,0,45,-45,45,-45,45,-45,45,-45,45,-45,90,90,90,90,90,90,90,90,-45,45,-45,45,-45,45,-45,45,-45,45,0,0,0,0,0,0]
# angle_in_degrees = [0,0,45,-45,45,-45,45,-45,45,-45,45,-45,45,-45,45,-45,45,-45,90,90,90,90,-45,45,-45,45,-45,45,-45,45,-45,45,-45,45,-45,45,-45,45,0,0]
N = len(angle_in_degrees) # number of plies
t_ply = 0.005 # ply thickness in m
h = t_ply * N
# Number of at each angle
n_0 = angle_in_degrees.count(0)
n_45 = 2 * angle_in_degrees.count(
45) # Using symmetry to save on processing resources
n_90 = angle_in_degrees.count(90)
# Actual percentages of each ply group
n_0_percent = n_0 / N
n_45_percent = n_45 / N
n_90_percent = n_90 / N
# Distance from laminate mid-plane to out surfaces of plies)
z0 = -h / 2
z = [0] * (N)
for i in range(N):
z[i] = (-h / 2) + ((i + 1) * t_ply)
# Distance from laminate mid-plane to mid-planes of plies
z_mid_plane = [0] * N
for i in range(N):
z_mid_plane[i] = (-h / 2) - (t_ply / 2) + ((i + 1) * t_ply)
# Ply orientation angle translated to radians to simplify equations below
angle = [0] * N
for i in range(N):
angle[i] = math.radians(angle_in_degrees[i])
# Stress Transformation (Global to Local), pg 112
T = [0] * N
for i in range(N):
T[i] = np.array([[
cos(angle[i])**2,
sin(angle[i])**2, 2 * sin(angle[i]) * cos(angle[i])
],
[
sin(angle[i])**2,
cos(angle[i])**2,
-2 * sin(angle[i]) * cos(angle[i])
],
[
-sin(angle[i]) * cos(angle[i]),
sin(angle[i]) * cos(angle[i]),
cos(angle[i])**2 - sin(angle[i])**2
]])
# Strain Transformation (Global-to-Local), pg 113
T_hat = [0] * N
for i in range(N):
T_hat[i] = np.array([[
cos(angle[i])**2,
sin(angle[i])**2,
sin(angle[i]) * cos(angle[i])
], [
sin(angle[i])**2,
cos(angle[i])**2, -sin(angle[i]) * cos(angle[i])
],
[
-2 * sin(angle[i]) * cos(angle[i]),
2 * sin(angle[i]) * cos(angle[i]),
cos(angle[i])**2 - sin(angle[i])**2
]])
# The local/lamina compliance matrix, pg 110
S11 = 1 / E11
S12 = -V21 / E22
S21 = -V12 / E11
S22 = 1 / E22
S33 = 1 / G12
S = np.array([[S11, S12, 0], [S21, S22, 0], [0, 0, S33]])
# The local/lamina stiffness matrix, pg 107
Q_array = lg.inv(S) # The inverse of the S matrix
# The global/laminate stiffness and compliance matrices
Q_bar_array = [0] * N
for i in range(N):
Q_bar_array[i] = mm(lg.inv(T[i]), mm(
Q_array, T_hat[i])) # The global/laminate stiffness matrix, pg 114
A_array = [[0] * 3] * 3
for i in range(N):
A_array += Q_bar_array[i] * t_ply
B_array = [[0] * 3] * 3
for i in range(N):
B_array += (1 / 2) * (Q_bar_array[i] * ((z[i]**2) -
((z[i] - t_ply)**2)))
D_array = [[0] * 3] * 3
for i in range(N):
D_array += (1 / 3) * (Q_bar_array[i] * ((z[i]**3) -
((z[i] - t_ply)**3)))
ABD_array = np.array([[
A_array[0][0], A_array[0][1], A_array[0][2], B_array[0][0],
B_array[0][1], B_array[0][2]
],
[
A_array[1][0], A_array[1][1], A_array[1][2],
B_array[1][0], B_array[1][1], B_array[1][2]
],
[
A_array[2][0], A_array[2][1], A_array[2][2],
B_array[2][0], B_array[2][1], B_array[2][2]
],
[
B_array[0][0], B_array[0][1], B_array[0][2],
D_array[0][0], D_array[0][1], D_array[0][2]
],
[
B_array[1][0], B_array[1][1], B_array[1][2],
D_array[1][0], D_array[1][1], D_array[1][2]
],
[
B_array[2][0], B_array[2][1], B_array[2][2],
D_array[2][0], D_array[2][1], D_array[2][2]
]])
ABD_inverse_array = lg.inv(ABD_array)
# Calculating the mid-plane strains and curvatures
mid_plane_strains_and_curvatures_array = mm(lg.inv(ABD_array),
stress_resultant)
# Transforming numpy array into lists for ease of formatting
Q = Q_array.tolist()
Q_bar = [0] * N
for i in range(N):
Q_bar[i] = Q_bar_array[i].tolist()
A = A_array.tolist()
B = B_array.tolist()
D = D_array.tolist()
ABD_inverse = ABD_inverse_array.tolist()
mid_plane_strains_and_curvatures = mid_plane_strains_and_curvatures_array.tolist(
)
# Parsing the Mid-plane strains and curvatures apart
mid_plane_strains = np.array([[mid_plane_strains_and_curvatures[0][0]],
[mid_plane_strains_and_curvatures[1][0]],
[mid_plane_strains_and_curvatures[2][0]]])
curvatures = np.array([[mid_plane_strains_and_curvatures[3][0]],
[mid_plane_strains_and_curvatures[4][0]],
[mid_plane_strains_and_curvatures[5][0]]])
# Global Strains at mid-plane of each ply
global_strains = [[[0]] * 3] * N
for i in range(N):
global_strains[i] = mid_plane_strains + z_mid_plane[i] * curvatures
# Global Stresses at mid-plane of each ply
global_stresses = [[[0]] * 3] * N
for i in range(N):
global_stresses[i] = mm(Q_bar[i], global_strains[i])
# Local strains
local_strains = [[[0]] * 3] * N
for i in range(N):
local_strains[i] = mm(T_hat[i], global_strains[i])
# Local stresses
local_stresses = [[[0]] * 3] * N
for i in range(N):
local_stresses[i] = mm(Q, local_strains[i])
# Define Tsai-Wu quadratic function coefficients (aR^2 + bR + cc = 0)
a = [0] * N
for i in range(N):
a[i] = (F11 * (local_stresses[i][0]**2)) + (
2 * F12 * local_stresses[i][0] * local_stresses[i][1]) + (
F22 * (local_stresses[i][1]**2)) + (F66 *
(local_stresses[i][2]**2))
b = [0] * N
for i in range(N):
b[i] = (F1 * local_stresses[i][0]) + (F2 * local_stresses[i][1])
cc = [-1] * N
# Strength Ratios for Tsai-Wu Criteria
R_1_array = [0] * N
for i in range(N):
R_1_array[i] = (-b[i] +
math.sqrt((b[i]**2) - 4 * a[i] * cc[i])) / (2 * a[i])
R_2 = [0] * N
for i in range(N):
R_2[i] = (-b[i] - math.sqrt((b[i]**2) - 4 * a[i] * cc[i])) / (2 * a[i])
R_1 = [0] * N
for i in range(N):
R_1[i] = R_1_array[i].tolist()
R_TW = min(R_1)
# Tsai-Wu critical loads
N_TW_xxc = float(R_TW * stress_resultant[0])
# Calculating E_xx
E_xx = (A[0][0] / h) * (1 - ((A[0][1]**2) / (A[0][0] * A[1][1])))
# Calculating ε_xx and ε_xxc
e_xx = float((stress_resultant[0]) / (E_xx * h))
e_xxc = float(e_xx * R_TW[0])
# Printing Ply Group Percentages
print('Percent n_0:' + format(n_0_percent, '>9.2f'))
print('Percent n_45:' + format(n_45_percent, '>8.2f'))
print('Percent n_90:' + format(n_90_percent, '>8.2f'))
print("\n# of ply that fails first: " + str(R_1.index(min(R_1)) + 1))
# Printing the Critical loads
print(
"\nThis is the calculated strain for first ply failure under Tsai-Wu:")
print("ε_xx = " + format(e_xx, '>8.5f'))
# Printing the Strength Ratio for Tsai-Wu Failure
print(
"\nThis is the Strength Ratio for the first ply failure under Tsai-Wu Failure Criterion:"
)
print("R_TW = " + str(np.round(R_TW[0], 3)))
# Printing the Critical loads
print("\nThis is the critical strain for first ply failure under Tsai-Wu:")
print("ε_xxc = " + format(e_xxc, '>8.5f'))
def solve(self):
""" Solve the finite horizon problem
"""
# Compute Pt[...] matrices
self.Pt[self.N] = self.Qf
for t in range(self.N, 0, -1):
atpb = mm(mm(self.A.T, self.Pt[t]), self.B)
mid = self.R + mm(mm(self.B.T, self.Pt[t]), self.B)
self.Pt[t - 1] = self.Q + mm(mm(
self.A.T, self.Pt[t]), self.A) - mm(mm(atpb, inv(mid)), atpb.T)
# Compute Kt[...] matrices
for t in range(0, self.N):
atpb = mm(mm(self.B.T, self.Pt[t + 1]), self.A)
mid = self.R + mm(mm(self.B.T, self.Pt[t + 1]), self.B)
self.Kt[t] = -mm(inv(mid), atpb)
# Compute optimal input and trajectory
for t in range(0, self.N):
self.Ut[t] = mm(self.Kt[t], self.Xt[t])
self.Xt[t + 1] = mm(self.A, self.Xt[t]) + mm(self.B, self.Ut[t])
def simxfrm(A,B): return mm(transpose(B),mm(A,B)) def simxfrmt(A,B): return mm(B,mm(A,transpose(B)))
seen_lm[lm_idx, k] = True
# initialize mean
r = z_tr[0, 0]
bearing = z_tr[1, 0]
lm_x_bar = bel_x + (r * cos(bearing + bel_theta))
lm_y_bar = bel_y + (r * sin(bearing + bel_theta))
lm_loc_estimates_x[lm_idx, k] = lm_x_bar
lm_loc_estimates_y[lm_idx, k] = lm_y_bar
# calculate jacobian
diff_x = lm_x_bar - bel_x
diff_y = lm_y_bar - bel_y
H = np.array([[r * diff_x, r * diff_y], [-diff_y, diff_x]])
H *= 1 / (r * r)
# initialize covariance
H_inv = mat_inv(H)
sigma = mm(H_inv, mm(Q_t, np.transpose(H_inv)))
lm_sig_i = 2 * lm_idx
p_sig_i = 2 * k
lm_uncertanties[lm_sig_i:lm_sig_i + 2,
p_sig_i:p_sig_i + 2] = sigma
# default importance weight
weight *= p0
else:
# measurement prediction
lm_x_bar = lm_loc_estimates_x[lm_idx, k]
lm_y_bar = lm_loc_estimates_y[lm_idx, k]
diff_x = lm_x_bar - bel_x
diff_y = lm_y_bar - bel_y
q = (diff_x * diff_x) + (diff_y * diff_y)
r = np.sqrt(q)
bearing = arctan2(diff_y, diff_x) - bel_theta
def simxfrmt(A,B): return mm(B,mm(A,transpose(B))) def geigh(A,B):
bel_y = chi_bar_x[1, pt]
bel_theta = chi_bar_x[2, pt]
x_diff = lm_x[i] - bel_x
y_diff = lm_y[i] - bel_y
q = (x_diff * x_diff) + (y_diff * y_diff)
Z_bar_t[0, pt] = np.sqrt(q)
Z_bar_t[1, pt] = arctan2(y_diff, x_diff) - bel_theta
Z_bar_t += chi_aug[-2:, :]
z_hat = np.zeros((2, 1))
for pt in range(two_L_bound):
z_hat += weights_m[0, pt] * np.reshape(Z_bar_t[:, pt],
z_hat.shape)
S_t = np.zeros((2, 2))
for pt in range(two_L_bound):
meas_diff = np.reshape(Z_bar_t[:, pt], z_hat.shape) - z_hat
S_t += weights_c[0, pt] * mm(meas_diff,
np.transpose(meas_diff))
sigma_t = np.zeros((3, 2))
for pt in range(two_L_bound):
state_diff = np.reshape(chi_bar_x[:, pt],
mu_bar.shape) - mu_bar
meas_diff = np.reshape(Z_bar_t[:, pt], z_hat.shape) - z_hat
sigma_t += weights_c[0, pt] * mm(state_diff,
np.transpose(meas_diff))
# (get the true measurement for the given landmark)
true_x = x_pos_true[0, t_step]
true_y = y_pos_true[0, t_step]
true_theta = theta_true[0, t_step]
z_true = np.zeros(z_hat.shape)
x_diff = lm_x[i] - true_x
y_diff = lm_y[i] - true_y
def mmultiply(left, right):
return mm(left, right)
def kalman_filter(self):
# for plotting
self.plotter = Plotter(self.times)
self.plotter.save_iteration_data(self, 0, None)
self.plotter.x_cov_times.append(0)
self.plotter.x_cov_vals.append(self.sigma[1 , 1])
for timestep in range(1,self.control_inputs.size):
c_input = self.control_inputs[0 , timestep]
c_input = np.reshape(c_input, (1,1))
z = self.measurements[0 , timestep]
# prediction
mu_bar = mm(self.A, self.mu) + mm(self.B, c_input)
sigma_bar = mm(self.A, mm(self.sigma, np.transpose(self.A))) + self.R
self.plotter.x_cov_times.append(self.times[timestep])
self.plotter.x_cov_vals.append(sigma_bar[1 , 1])
# correction
c_transpose = np.transpose(self.C)
matrix_one = mm(sigma_bar, c_transpose)
matrix_two = mat_inv(mm(self.C, mm(sigma_bar, c_transpose)) + self.Q)
k = mm(matrix_one, matrix_two)
mu = mu_bar + mm(k, z - mm(self.C, mu_bar))
sigma = mm(np.identity(k.shape[0]) - mm(k, self.C), sigma_bar)
# update the model's belief for the next filter iteration
self.mu = mu
self.sigma = sigma
self.plotter.save_iteration_data(self, timestep, k)
self.plotter.x_cov_times.append(self.times[timestep])
self.plotter.x_cov_vals.append(sigma[1 , 1])
def PPCA(Y_mat, d=20):
"""
Implements probabilistic PCA for data with missing values,
using a factorizing distribution over hidden states and hidden observations.
Args:
Y: (N by D ) input numpy ndarray of data vectors
d: ( int ) dimension of latent space
dia: (boolean) if True: print objective each step
Returns:
ss: ( float ) isotropic variance outside subspace
C: (D by d ) C*C' + I*ss is covariance model, C has scaled principal directions as cols
M: (D by 1 ) data mean
X: (N by d ) expected states
Ye: (N by D ) expected complete observations (differs from Y if data is missing)
Based on MATLAB code from J.J. VerBeek, 2006. http://lear.inrialpes.fr/~verbeek
"""
Y = Y_mat.copy()
N, D = shape(
Y
) # N observations in D dimensions (i.e. D is number of features, N is samples)
threshold = 1E-4 # minimal relative change in objective function to continue
hidden = isnan(Y)
missing = hidden.sum()
if (missing > 0):
M = nanmean(Y, axis=0)
else:
M = average(Y, axis=0)
Ye = Y - repmat(M, N, 1)
if (missing > 0):
Ye[hidden] = 0
# initialize
C = normal(loc=0.0, scale=1.0, size=(D, d))
CtC = mm(C.T, C)
X = mm(mm(Ye, C), inv(CtC))
recon = mm(X, C.T)
recon[hidden] = 0
ss = np.sum((recon - Ye)**2) / (N * D - missing)
count = 1
old = np.inf
# EM Iterations
while (count):
Sx = inv(eye(d) + CtC / ss) # E-step, covariances
ss_old = ss
if (missing > 0):
proj = mm(X, C.T)
Ye[hidden] = proj[hidden]
X = mm(mm(Ye, C), Sx / ss) # E-step: expected values
SumXtX = mm(X.T, X) # M-step
C = mm(mm(mm(Ye.T, X), (SumXtX + N * Sx).T),
inv(mm((SumXtX + N * Sx), (SumXtX + N * Sx).T)))
CtC = mm(C.T, C)
ss = (np.sum((mm(X, C.T) - Ye)**2) + N * np.sum(CtC * Sx) +
missing * ss_old) / (N * D)
# transform Sx determinant into numpy float128 in order to deal with high dimensionality
Sx_det = np.min(Sx).astype(np.float64)**shape(Sx)[0] * det(
Sx / np.min(Sx))
objective = N * D + N * (D * log(ss) + tr(Sx) - log(Sx_det)) + tr(
SumXtX) - missing * log(ss_old)
rel_ch = np.abs(1 - objective / old)
old = objective
count = count + 1
if (rel_ch < threshold and count > 5):
count = 0
# if (dia == True):
# print('Objective: %.2f, Relative Change %.5f' % (objective, rel_ch))
# C = orth(C)
# covM = cov(mm(Ye, C).T)
# vals, vecs = eig(covM)
# ordr = np.argsort(vals)[::-1]
# vals = vals[ordr]
# vecs = vecs[:, ordr]
# C = mm(C, vecs)
# X = mm(Ye, C)
# add data mean to expected complete data
Ye = Ye + repmat(M, N, 1)
# return C, ss, M, X, Ye
return Ye
def getCovariance(A, B, E):
res = mm(A, B)
res = mm(res, transpose(A))
res = res + E
return res
def geigh(A,B):
X = canorth(B)
E,V = eigh(simxfrm(A,X))
return E,mm(X,V)