def catalog(self):
"""
Add existing Event to a Catalog
"""
c = Catalog(events=[self.event])
c.creation_info = CreationInfo(
creation_time = UTCDateTime(),
agency_id = self.agency,
version = self.event.creation_info.version,
)
c.resource_id = self._rid(c)
return c
def _deserialize(self):
catalog = Catalog()
res_id = '/'.join((res_id_prefix,
self.filename.replace(':', '/')))\
.replace('\\', '/').replace('//', '/')
catalog.resource_id = ResourceIdentifier(id=res_id)
catalog.description = 'Created from NEIC PDE mchedr format'
catalog.comments = ''
catalog.creation_info = CreationInfo(creation_time=UTCDateTime())
for line in self.fh.readlines():
# XXX: ugly, probably we should do everything in byte strings
# here? Is the pde / mchedr format unicode aware?
line = line.decode()
record_id = line[0:2]
if record_id == 'HY':
event = self._parse_record_hy(line)
catalog.append(event)
elif record_id == 'P ':
pick, arrival = self._parse_record_p(line, event)
elif record_id == 'E ':
self._parse_record_e(line, event)
elif record_id == 'L ':
self._parse_record_l(line, event)
elif record_id == 'A ':
self._parse_record_a(line, event)
elif record_id == 'C ':
self._parse_record_c(line, event)
elif record_id == 'AH':
self._parse_record_ah(line, event)
elif record_id == 'AE':
self._parse_record_ae(line, event)
elif record_id == 'Dp':
focal_mechanism = self._parse_record_dp(line, event)
elif record_id == 'Dt':
self._parse_record_dt(line, focal_mechanism)
elif record_id == 'Da':
self._parse_record_da(line, focal_mechanism)
elif record_id == 'Dc':
self._parse_record_dc(line, focal_mechanism)
elif record_id == 'M ':
self._parse_record_m(line, event, pick)
elif record_id == 'S ':
self._parse_record_s(line, event, pick, arrival)
self.fh.close()
# strip extra whitespaces from event comments
for event in catalog:
for comment in event.comments:
comment.text = comment.text.strip()
event.scope_resource_ids()
return catalog
def _deserialize(self):
catalog = Catalog()
res_id = '/'.join((res_id_prefix,
self.filename.replace(':', '/')))\
.replace('\\', '/').replace('//', '/')
catalog.resource_id = ResourceIdentifier(id=res_id)
catalog.description = 'Created from NEIC PDE mchedr format'
catalog.comments = ''
catalog.creation_info = CreationInfo(creation_time=UTCDateTime())
for line in self.fh.readlines():
# XXX: ugly, probably we should do everything in byte strings
# here? Is the pde / mchedr format unicode aware?
line = line.decode()
record_id = line[0:2]
if record_id == 'HY':
event = self._parse_record_hy(line)
catalog.append(event)
elif record_id == 'P ':
pick, arrival = self._parse_record_p(line, event)
elif record_id == 'E ':
self._parse_record_e(line, event)
elif record_id == 'L ':
self._parse_record_l(line, event)
elif record_id == 'A ':
self._parse_record_a(line, event)
elif record_id == 'C ':
self._parse_record_c(line, event)
elif record_id == 'AH':
self._parse_record_ah(line, event)
elif record_id == 'AE':
self._parse_record_ae(line, event)
elif record_id == 'Dp':
focal_mechanism = self._parse_record_dp(line, event)
elif record_id == 'Dt':
self._parse_record_dt(line, focal_mechanism)
elif record_id == 'Da':
self._parse_record_da(line, focal_mechanism)
elif record_id == 'Dc':
self._parse_record_dc(line, focal_mechanism)
elif record_id == 'M ':
self._parse_record_m(line, event, pick)
elif record_id == 'S ':
self._parse_record_s(line, event, pick, arrival)
self.fh.close()
# strip extra whitespaces from event comments
for event in catalog:
for comment in event.comments:
comment.text = comment.text.strip()
event.scope_resource_ids()
return catalog
def _deserialize(self):
catalog = Catalog()
res_id = "/".join((res_id_prefix, self.filename))
catalog.resource_id = ResourceIdentifier(id=res_id)
catalog.description = "Created from NEIC PDE mchedr format"
catalog.comments = ""
catalog.creation_info = CreationInfo(creation_time=UTCDateTime())
for line in self.fh.readlines():
# XXX: ugly, probably we should do everything in byte strings
# here? Is the pde / mchedr format unicode aware?
line = line.decode()
record_id = line[0:2]
if record_id == "HY":
event = self._parseRecordHY(line)
catalog.append(event)
elif record_id == "P ":
pick, arrival = self._parseRecordP(line, event)
elif record_id == "E ":
self._parseRecordE(line, event)
elif record_id == "L ":
self._parseRecordL(line, event)
elif record_id == "A ":
self._parseRecordA(line, event)
elif record_id == "C ":
self._parseRecordC(line, event)
elif record_id == "AH":
self._parseRecordAH(line, event)
elif record_id == "AE":
self._parseRecordAE(line, event)
elif record_id == "Dp":
focal_mechanism = self._parseRecordDp(line, event)
elif record_id == "Dt":
self._parseRecordDt(line, focal_mechanism)
elif record_id == "Da":
self._parseRecordDa(line, focal_mechanism)
elif record_id == "Dc":
self._parseRecordDc(line, focal_mechanism)
elif record_id == "M ":
self._parseRecordM(line, event, pick)
elif record_id == "S ":
self._parseRecordS(line, event, pick, arrival)
self.fh.close()
# strip extra whitespaces from event comments
for event in catalog:
for comment in event.comments:
comment.text = comment.text.strip()
return catalog
def _deserialize(self):
catalog = Catalog()
res_id = '/'.join((res_id_prefix, self.filename))
catalog.resource_id = ResourceIdentifier(id=res_id)
catalog.description = 'Created from NEIC PDE mchedr format'
catalog.comments = ''
catalog.creation_info = CreationInfo(creation_time=UTCDateTime())
for line in self.fh.readlines():
record_id = line[0:2]
if record_id == 'HY':
event = self._parseRecordHY(line)
catalog.append(event)
elif record_id == 'P ':
pick, arrival = self._parseRecordP(line, event)
elif record_id == 'E ':
self._parseRecordE(line, event)
elif record_id == 'L ':
self._parseRecordL(line, event)
elif record_id == 'A ':
self._parseRecordA(line, event)
elif record_id == 'C ':
self._parseRecordC(line, event)
elif record_id == 'AH':
self._parseRecordAH(line, event)
elif record_id == 'AE':
self._parseRecordAE(line, event)
elif record_id == 'Dp':
focal_mechanism = self._parseRecordDp(line, event)
elif record_id == 'Dt':
self._parseRecordDt(line, focal_mechanism)
elif record_id == 'Da':
self._parseRecordDa(line, focal_mechanism)
elif record_id == 'Dc':
self._parseRecordDc(line, focal_mechanism)
elif record_id == 'M ':
self._parseRecordM(line, event, pick)
elif record_id == 'S ':
self._parseRecordS(line, event, pick, arrival)
self.fh.close()
# strip extra whitespaces from event comments
for event in catalog:
for comment in event.comments:
comment.text = comment.text.strip()
return catalog
def _deserialize(self):
catalog = Catalog()
catalog.description = 'Created from GSE2 format'
catalog.creation_info = self._get_creation_info()
# Flag used to ignore line which aren't in a BEGIN-STOP block
begin_block = False
# Flag used to ignore line which aren't in a BULLETIN block
bulletin_block = False
try:
for line in self.lines:
if line.startswith('BEGIN'):
if begin_block:
# 2 BEGIN without STOP
message = self._add_line_nb('Missing STOP tag')
raise GSE2BulletinSyntaxError(message)
else:
# Enter a BEGIN block
begin_block = True
self._check_header(line)
elif line.startswith('STOP'):
if begin_block:
# Exit a BEGIN-STOP block
begin_block = False
else:
# STOP without BEGIN
message = self._add_line_nb('Missing BEGIN tag')
raise GSE2BulletinSyntaxError(message)
elif line.startswith('DATA_TYPE'):
bulletin_block = line[10:18] == 'BULLETIN'
if not begin_block or not bulletin_block:
# Not in a BEGIN-STOP block, nor a DATA_TYPE BULLETIN
# block.
continue
# If a "Reviewed Event Bulletin" or "Reviewed Bulletin"
# line exists, put it in comment
if 'Reviewed Event Bulletin' in line \
or 'Reviewed Bulletin' in line:
comment = self._comment(line.strip())
if comment.text:
catalog.comments.append(comment)
# Detect start of an event
elif line.startswith('EVENT'):
event = self._parse_event(line)
if event:
catalog.append(event)
except StopIteration:
message = self._add_line_nb('Unexpected EOF while parsing')
raise GSE2BulletinSyntaxError(message)
except Exception:
self._warn('Unexpected error')
raise
if begin_block:
# BEGIN-STOP block not closed
text = 'Unexpected EOF while parsing, BEGIN-STOP block not closed'
message = self._add_line_nb(text)
raise GSE2BulletinSyntaxError(message)
catalog.resource_id = self._get_res_id('event/evid')
return catalog
def readSeishubEventFile(filename):
"""
Reads a Seishub event file and returns a ObsPy Catalog object.
.. warning::
This function should NOT be called directly, it registers via the
ObsPy :func:`~obspy.core.event.readEvents` function, call this instead.
:type filename: str
:param filename: Seishub event file to be read.
:rtype: :class:`~obspy.core.event.Catalog`
:return: A ObsPy Catalog object.
.. rubric:: Example
"""
global CURRENT_TYPE
base_name = os.path.basename(filename)
if base_name.lower().startswith("baynet"):
CURRENT_TYPE = "baynet"
elif base_name.lower().startswith("earthworm"):
CURRENT_TYPE = "earthworm"
elif base_name.lower().startswith("gof"):
CURRENT_TYPE = "seiscomp3"
elif base_name.lower().startswith("obspyck") or base_name == "5622":
CURRENT_TYPE = "obspyck"
elif base_name.lower().startswith("toni"):
CURRENT_TYPE = "toni"
else:
print "AAAAAAAAAAAAAAAAAAAAAAAAAAHHHHHHHHHHHHHHHHHHH"
raise Exception
# Just init the parser, the SeisHub event file format has no namespaces.
parser = XMLParser(filename)
# Create new Event object.
public_id = parser.xpath('event_id/value')[0].text
# A Seishub event just specifies a single event so Catalog information is
# not really given.
catalog = Catalog()
catalog.resource_id = "/".join([RESOURCE_ROOT, "catalog", public_id])
# Read the event_type tag.
account = parser.xpath2obj('event_type/account', parser, str)
user = parser.xpath2obj('event_type/user', parser, str)
global_evaluation_mode = parser.xpath2obj('event_type/value', parser, str)
public = parser.xpath2obj('event_type/public', parser, str)
public = {"True": True, "False": False}.get(public, None)
if account is not None and account.lower() != "sysop":
public = False
# The author will be stored in the CreationInfo object. This will be the
# creation info of the event as well as on all picks.
author = user
if CURRENT_TYPE in ["seiscomp3", "earthworm"]:
author = CURRENT_TYPE
creation_info = {"author": author,
"agency_id": "Erdbebendienst Bayern",
"agency_uri": "%s/agency" % RESOURCE_ROOT,
"creation_time": NOW}
# Create the event object.
event = Event(resource_id="/".join([RESOURCE_ROOT, "event", public_id]),
creation_info=creation_info)
# If account is None or 'sysop' and public is true, write 'public in the
# comment, 'private' otherwise.
event.extra = AttribDict()
event.extra.public = {'value': public, 'namespace': NAMESPACE}
event.extra.evaluationMode = {'value': global_evaluation_mode, 'namespace': NAMESPACE}
event_type = parser.xpath2obj('type', parser, str)
if event_type is not None:
if event_type == "induced earthquake":
event_type = "induced or triggered event"
if event_type != "null":
event.event_type = event_type
# Parse the origins.
origins = parser.xpath("origin")
if len(origins) > 1:
msg = "Only files with a single origin are currently supported"
raise Exception(msg)
for origin_el in parser.xpath("origin"):
origin = __toOrigin(parser, origin_el)
event.origins.append(origin)
# Parse the magnitudes.
for magnitude_el in parser.xpath("magnitude"):
magnitude = __toMagnitude(parser, magnitude_el, origin)
if magnitude.mag is None:
continue
event.magnitudes.append(magnitude)
# Parse the picks. Pass the global evaluation mode (automatic, manual)
for pick_el in parser.xpath("pick"):
pick = __toPick(parser, pick_el, global_evaluation_mode)
if pick is None:
continue
event.picks.append(pick)
# The arrival object gets the following things from the Seishub.pick
# objects
# arrival.time_weight = pick.phase_weight
# arrival.time_residual = pick.phase_res
# arrival.azimuth = pick.azimuth
# arrival.take_off_angle = pick.incident
# arrival.distance = hyp_dist
arrival = __toArrival(parser, pick_el, global_evaluation_mode, pick)
if event.origins:
event.origins[0].arrivals.append(arrival)
for mag in event.station_magnitudes:
mag.origin_id = event.origins[0].resource_id
# Parse the station magnitudes.
for stat_magnitude_el in parser.xpath("stationMagnitude"):
stat_magnitude = __toStationMagnitude(parser, stat_magnitude_el)
event.station_magnitudes.append(stat_magnitude)
# Parse the amplitudes
# we don't reference their id in the corresponding station magnitude,
# because we use one amplitude measurement for each component
for el in parser.xpath("stationMagnitude/amplitude"):
event.amplitudes.append(__toAmplitude(parser, el))
for mag in event.station_magnitudes:
mag.origin_id = event.origins[0].resource_id
for _i, stat_mag in enumerate(event.station_magnitudes):
contrib = StationMagnitudeContribution()
weight = None
# The order of station magnitude objects is the same as in the xml
# file.
weight = parser.xpath2obj("weight",
parser.xpath("stationMagnitude")[_i], float)
if weight is not None:
contrib.weight = weight
contrib.station_magnitude_id = stat_mag.resource_id
event.magnitudes[0].station_magnitude_contributions.append(contrib)
for foc_mec_el in parser.xpath("focalMechanism"):
foc_mec = __toFocalMechanism(parser, foc_mec_el)
if foc_mec is not None:
event.focal_mechanisms.append(foc_mec)
# Set the origin id for the focal mechanisms. There is only one origin per
# SeisHub event file.
for focmec in event.focal_mechanisms:
focmec.triggering_origin_id = event.origins[0].resource_id
# Add the event to the catalog
catalog.append(event)
return catalog
def _deserialize(self):
catalog = Catalog()
catalog.description = 'Created from GSE2 format'
catalog.creation_info = self._get_creation_info()
# Flag used to ignore line which aren't in a BEGIN-STOP block
begin_block = False
# Flag used to ignore line which aren't in a BULLETIN block
bulletin_block = False
try:
for line in self.lines:
if line.startswith('BEGIN'):
if begin_block:
# 2 BEGIN without STOP
message = self._add_line_nb('Missing STOP tag')
raise GSE2BulletinSyntaxError(message)
else:
# Enter a BEGIN block
begin_block = True
self._check_header(line)
elif line.startswith('STOP'):
if begin_block:
# Exit a BEGIN-STOP block
begin_block = False
else:
# STOP without BEGIN
message = self._add_line_nb('Missing BEGIN tag')
raise GSE2BulletinSyntaxError(message)
elif line.startswith('DATA_TYPE'):
bulletin_block = line[10:18] == 'BULLETIN'
if not begin_block or not bulletin_block:
# Not in a BEGIN-STOP block, nor a DATA_TYPE BULLETIN
# block.
continue
# If a "Reviewed Event Bulletin" or "Reviewed Bulletin"
# line exists, put it in comment
if 'Reviewed Event Bulletin' in line \
or 'Reviewed Bulletin' in line:
comment = self._comment(line.strip())
if comment.text:
catalog.comments.append(comment)
# Detect start of an event
elif line.startswith('EVENT'):
event = self._parse_event(line)
if event:
catalog.append(event)
except StopIteration:
message = self._add_line_nb('Unexpected EOF while parsing')
raise GSE2BulletinSyntaxError(message)
except Exception:
self._warn('Unexpected error')
raise
if begin_block:
# BEGIN-STOP block not closed
text = 'Unexpected EOF while parsing, BEGIN-STOP block not closed'
message = self._add_line_nb(text)
raise GSE2BulletinSyntaxError(message)
catalog.resource_id = self._get_res_id('event/evid')
return catalog
def iris2quakeml(url, output_folder=None):
if not "/spudservice/" in url:
url = url.replace("/spud/", "/spudservice/")
if url.endswith("/"):
url += "quakeml"
else:
url += "/quakeml"
print "Downloading %s..." % url
r = requests.get(url)
if r.status_code != 200:
msg = "Error Downloading file!"
raise Exception(msg)
# For some reason the quakeml file is escaped HTML.
h = HTMLParser.HTMLParser()
data = h.unescape(r.content)
# Replace some XML tags.
data = data.replace("long-period body waves", "body waves")
data = data.replace("intermediate-period surface waves", "surface waves")
data = data.replace("long-period mantle waves", "mantle waves")
data = data.replace("<html><body><pre>", "")
data = data.replace("</pre></body></html>", "")
# Change the resource identifiers. Colons are not allowed in QuakeML.
pattern = r"(\d{4})-(\d{2})-(\d{2})T(\d{2}):(\d{2}):(\d{2})\.(\d{6})"
data = re.sub(pattern, r"\1-\2-\3T\4-\5-\6.\7", data)
data = StringIO(data)
try:
cat = readEvents(data)
except:
msg = "Could not read downloaded event data"
raise ValueError(msg)
# Parse the event, and use only one origin, magnitude and focal mechanism.
# Only the first event is used. Should not be a problem for the chosen
# global cmt application.
ev = cat[0]
if ev.preferred_origin():
ev.origins = [ev.preferred_origin()]
else:
ev.origins = [ev.origins[0]]
if ev.preferred_focal_mechanism():
ev.focal_mechanisms = [ev.preferred_focal_mechanism()]
else:
ev.focal_mechanisms = [ev.focal_mechanisms[0]]
try:
mt = ev.focal_mechanisms[0].moment_tensor
except:
msg = "No moment tensor found in file."
raise ValueError
seismic_moment_in_dyn_cm = mt.scalar_moment
if not seismic_moment_in_dyn_cm:
msg = "No scalar moment found in file."
raise ValueError(msg)
# Create a new magnitude object with the moment magnitude calculated from
# the given seismic moment.
mag = Magnitude()
mag.magnitude_type = "Mw"
mag.origin_id = ev.origins[0].resource_id
# This is the formula given on the GCMT homepage.
mag.mag = (2.0 / 3.0) * (math.log10(seismic_moment_in_dyn_cm) - 16.1)
mag.resource_id = ev.origins[0].resource_id.resource_id.replace("Origin",
"Magnitude")
ev.magnitudes = [mag]
ev.preferred_magnitude_id = mag.resource_id
# Convert the depth to meters.
org = ev.origins[0]
org.depth *= 1000.0
if org.depth_errors.uncertainty:
org.depth_errors.uncertainty *= 1000.0
# Ugly asserts -- this is just a simple script.
assert(len(ev.magnitudes) == 1)
assert(len(ev.origins) == 1)
assert(len(ev.focal_mechanisms) == 1)
# All values given in the QuakeML file are given in dyne * cm. Convert them
# to N * m.
for key, value in mt.tensor.iteritems():
if key.startswith("m_") and len(key) == 4:
mt.tensor[key] /= 1E7
if key.endswith("_errors") and hasattr(value, "uncertainty"):
mt.tensor[key].uncertainty /= 1E7
mt.scalar_moment /= 1E7
if mt.scalar_moment_errors.uncertainty:
mt.scalar_moment_errors.uncertainty /= 1E7
p_axes = ev.focal_mechanisms[0].principal_axes
for ax in [p_axes.t_axis, p_axes.p_axis, p_axes.n_axis]:
if ax is None or not ax.length:
continue
ax.length /= 1E7
# Check if it has a source time function
stf = mt.source_time_function
if stf:
if stf.type != "triangle":
msg = ("Source time function type '%s' not yet mapped. Please "
"contact the developers.") % stf.type
raise NotImplementedError(msg)
if not stf.duration:
if not stf.decay_time:
msg = "Not known how to derive duration without decay time."
raise NotImplementedError(msg)
# Approximate the duraction for triangular STF.
stf.duration = 2 * stf.decay_time
# Get the flinn_engdahl region for a nice name.
fe = FlinnEngdahl()
region_name = fe.get_region(ev.origins[0].longitude,
ev.origins[0].latitude)
region_name = region_name.replace(" ", "_")
event_name = "GCMT_event_%s_Mag_%.1f_%s-%s-%s-%s-%s.xml" % \
(region_name, ev.magnitudes[0].mag, ev.origins[0].time.year,
ev.origins[0].time.month, ev.origins[0].time.day,
ev.origins[0].time.hour, ev.origins[0].time.minute)
# Check if the ids of the magnitude and origin contain the corresponding
# tag. Otherwise replace tme.
ev.origins[0].resource_id = ev.origins[0].resource_id.resource_id.replace(
"quakeml/gcmtid", "quakeml/origin/gcmtid")
ev.magnitudes[0].resource_id = \
ev.magnitudes[0].resource_id.resource_id.replace(
"quakeml/gcmtid", "quakeml/magnitude/gcmtid")
# Fix up the moment tensor resource_ids.
mt.derived_origin_id = ev.origins[0].resource_id
mt.resource_id = mt.resource_id.resource_id.replace("focalmechanism",
"momenttensor")
cat = Catalog()
cat.resource_id = ev.origins[0].resource_id.resource_id.replace("origin",
"event_parameters")
cat.append(ev)
if output_folder:
event_name = os.path.join(output_folder, event_name)
cat.write(event_name, format="quakeml", validate=True)
print "Written file", event_name
def readSeishubEventFile(filename):
"""
Reads a Seishub event file and returns a ObsPy Catalog object.
.. warning::
This function should NOT be called directly, it registers via the
ObsPy :func:`~obspy.core.event.readEvents` function, call this instead.
:type filename: str
:param filename: Seishub event file to be read.
:rtype: :class:`~obspy.core.event.Catalog`
:return: A ObsPy Catalog object.
.. rubric:: Example
"""
global CURRENT_TYPE
base_name = os.path.basename(filename)
if base_name.lower().startswith("baynet"):
CURRENT_TYPE = "baynet"
elif base_name.lower().startswith("earthworm"):
CURRENT_TYPE = "earthworm"
elif base_name.lower().startswith("gof"):
CURRENT_TYPE = "seiscomp3"
elif base_name.lower().startswith("obspyck") or base_name == "5622":
CURRENT_TYPE = "obspyck"
elif base_name.lower().startswith("toni"):
CURRENT_TYPE = "toni"
else:
print "AAAAAAAAAAAAAAAAAAAAAAAAAAHHHHHHHHHHHHHHHHHHH"
raise Exception
# Just init the parser, the SeisHub event file format has no namespaces.
parser = XMLParser(filename)
# Create new Event object.
public_id = parser.xpath('event_id/value')[0].text
# A Seishub event just specifies a single event so Catalog information is
# not really given.
catalog = Catalog()
catalog.resource_id = "/".join([RESOURCE_ROOT, "catalog", public_id])
# Read the event_type tag.
account = parser.xpath2obj('event_type/account', parser, str)
user = parser.xpath2obj('event_type/user', parser, str)
global_evaluation_mode = parser.xpath2obj('event_type/value', parser, str)
public = parser.xpath2obj('event_type/public', parser, str)
public = {
"True": True,
"False": False,
"true": True,
"false": False
}.get(public, None)
if account is not None and account.lower() != "sysop":
public = False
# The author will be stored in the CreationInfo object. This will be the
# creation info of the event as well as on all picks.
author = user
if CURRENT_TYPE in ["seiscomp3", "earthworm"]:
public = False
author = CURRENT_TYPE
global_evaluation_mode = "automatic"
elif CURRENT_TYPE in ["baynet", "toni"]:
public = True
author = CURRENT_TYPE
global_evaluation_mode = "manual"
creation_info = {
"author": author,
"agency_id": "Erdbebendienst Bayern",
"agency_uri": "%s/agency" % RESOURCE_ROOT,
"creation_time": NOW
}
# Create the event object.
event = Event(resource_id="/".join([RESOURCE_ROOT, "event", public_id]),
creation_info=creation_info)
# If account is None or 'sysop' and public is true, write 'public in the
# comment, 'private' otherwise.
event.extra = AttribDict()
event.extra.public = {'value': public, 'namespace': NAMESPACE}
event.extra.evaluationMode = {
'value': global_evaluation_mode,
'namespace': NAMESPACE
}
event_type = parser.xpath2obj('type', parser, str)
if event_type is not None:
if event_type == "induced earthquake":
event_type = "induced or triggered event"
if event_type != "null":
event.event_type = event_type
# Parse the origins.
origins = parser.xpath("origin")
if len(origins) > 1:
msg = "Only files with a single origin are currently supported"
raise Exception(msg)
for origin_el in parser.xpath("origin"):
origin = __toOrigin(parser, origin_el)
event.origins.append(origin)
# Parse the magnitudes.
for magnitude_el in parser.xpath("magnitude"):
magnitude = __toMagnitude(parser, magnitude_el, origin)
if magnitude.mag is None:
continue
event.magnitudes.append(magnitude)
# Parse the picks. Pass the global evaluation mode (automatic, manual)
for pick_el in parser.xpath("pick"):
pick = __toPick(parser, pick_el, global_evaluation_mode)
if pick is None:
continue
event.picks.append(pick)
# The arrival object gets the following things from the Seishub.pick
# objects
# arrival.time_weight = pick.phase_weight
# arrival.time_residual = pick.phase_res
# arrival.azimuth = pick.azimuth
# arrival.take_off_angle = pick.incident
# arrival.distance = hyp_dist
arrival = __toArrival(parser, pick_el, global_evaluation_mode, pick)
if event.origins:
event.origins[0].arrivals.append(arrival)
for mag in event.station_magnitudes:
mag.origin_id = event.origins[0].resource_id
# Parse the station magnitudes.
for stat_magnitude_el in parser.xpath("stationMagnitude"):
stat_magnitude = __toStationMagnitude(parser, stat_magnitude_el)
event.station_magnitudes.append(stat_magnitude)
# Parse the amplitudes
# we don't reference their id in the corresponding station magnitude,
# because we use one amplitude measurement for each component
for el in parser.xpath("stationMagnitude/amplitude"):
event.amplitudes.append(__toAmplitude(parser, el))
for mag in event.station_magnitudes:
mag.origin_id = event.origins[0].resource_id
for _i, stat_mag in enumerate(event.station_magnitudes):
contrib = StationMagnitudeContribution()
weight = None
# The order of station magnitude objects is the same as in the xml
# file.
weight = parser.xpath2obj("weight",
parser.xpath("stationMagnitude")[_i], float)
if weight is not None:
contrib.weight = weight
contrib.station_magnitude_id = stat_mag.resource_id
event.magnitudes[0].station_magnitude_contributions.append(contrib)
for foc_mec_el in parser.xpath("focalMechanism"):
foc_mec = __toFocalMechanism(parser, foc_mec_el)
if foc_mec is not None:
event.focal_mechanisms.append(foc_mec)
# Set the origin id for the focal mechanisms. There is only one origin per
# SeisHub event file.
for focmec in event.focal_mechanisms:
focmec.triggering_origin_id = event.origins[0].resource_id
# Add the event to the catalog
catalog.append(event)
return catalog
def iris2quakeml(url, output_folder=None):
if not "/spudservice/" in url:
url = url.replace("/spud/", "/spudservice/")
if url.endswith("/"):
url += "quakeml"
else:
url += "/quakeml"
print "Downloading %s..." % url
r = requests.get(url)
if r.status_code != 200:
msg = "Error Downloading file!"
raise Exception(msg)
# For some reason the quakeml file is escaped HTML.
h = HTMLParser.HTMLParser()
data = h.unescape(r.content)
# Replace some XML tags.
data = data.replace("long-period body waves", "body waves")
data = data.replace("intermediate-period surface waves", "surface waves")
data = data.replace("long-period mantle waves", "mantle waves")
data = data.replace("<html><body><pre>", "")
data = data.replace("</pre></body></html>", "")
# Change the resource identifiers. Colons are not allowed in QuakeML.
pattern = r"(\d{4})-(\d{2})-(\d{2})T(\d{2}):(\d{2}):(\d{2})\.(\d{6})"
data = re.sub(pattern, r"\1-\2-\3T\4-\5-\6.\7", data)
data = StringIO(data)
try:
cat = readEvents(data)
except:
msg = "Could not read downloaded event data"
raise ValueError(msg)
# Parse the event, and use only one origin, magnitude and focal mechanism.
# Only the first event is used. Should not be a problem for the chosen
# global cmt application.
ev = cat[0]
if ev.preferred_origin():
ev.origins = [ev.preferred_origin()]
else:
ev.origins = [ev.origins[0]]
if ev.preferred_focal_mechanism():
ev.focal_mechanisms = [ev.preferred_focal_mechanism()]
else:
ev.focal_mechanisms = [ev.focal_mechanisms[0]]
try:
mt = ev.focal_mechanisms[0].moment_tensor
except:
msg = "No moment tensor found in file."
raise ValueError
seismic_moment_in_dyn_cm = mt.scalar_moment
if not seismic_moment_in_dyn_cm:
msg = "No scalar moment found in file."
raise ValueError(msg)
# Create a new magnitude object with the moment magnitude calculated from
# the given seismic moment.
mag = Magnitude()
mag.magnitude_type = "Mw"
mag.origin_id = ev.origins[0].resource_id
# This is the formula given on the GCMT homepage.
mag.mag = (2.0 / 3.0) * (math.log10(seismic_moment_in_dyn_cm) - 16.1)
mag.resource_id = ev.origins[0].resource_id.resource_id.replace(
"Origin", "Magnitude")
ev.magnitudes = [mag]
ev.preferred_magnitude_id = mag.resource_id
# Convert the depth to meters.
org = ev.origins[0]
org.depth *= 1000.0
if org.depth_errors.uncertainty:
org.depth_errors.uncertainty *= 1000.0
# Ugly asserts -- this is just a simple script.
assert (len(ev.magnitudes) == 1)
assert (len(ev.origins) == 1)
assert (len(ev.focal_mechanisms) == 1)
# All values given in the QuakeML file are given in dyne * cm. Convert them
# to N * m.
for key, value in mt.tensor.iteritems():
if key.startswith("m_") and len(key) == 4:
mt.tensor[key] /= 1E7
if key.endswith("_errors") and hasattr(value, "uncertainty"):
mt.tensor[key].uncertainty /= 1E7
mt.scalar_moment /= 1E7
if mt.scalar_moment_errors.uncertainty:
mt.scalar_moment_errors.uncertainty /= 1E7
p_axes = ev.focal_mechanisms[0].principal_axes
for ax in [p_axes.t_axis, p_axes.p_axis, p_axes.n_axis]:
if ax is None or not ax.length:
continue
ax.length /= 1E7
# Check if it has a source time function
stf = mt.source_time_function
if stf:
if stf.type != "triangle":
msg = ("Source time function type '%s' not yet mapped. Please "
"contact the developers.") % stf.type
raise NotImplementedError(msg)
if not stf.duration:
if not stf.decay_time:
msg = "Not known how to derive duration without decay time."
raise NotImplementedError(msg)
# Approximate the duraction for triangular STF.
stf.duration = 2 * stf.decay_time
# Get the flinn_engdahl region for a nice name.
fe = FlinnEngdahl()
region_name = fe.get_region(ev.origins[0].longitude,
ev.origins[0].latitude)
region_name = region_name.replace(" ", "_")
event_name = "GCMT_event_%s_Mag_%.1f_%s-%s-%s-%s-%s.xml" % \
(region_name, ev.magnitudes[0].mag, ev.origins[0].time.year,
ev.origins[0].time.month, ev.origins[0].time.day,
ev.origins[0].time.hour, ev.origins[0].time.minute)
# Check if the ids of the magnitude and origin contain the corresponding
# tag. Otherwise replace tme.
ev.origins[0].resource_id = ev.origins[0].resource_id.resource_id.replace(
"quakeml/gcmtid", "quakeml/origin/gcmtid")
ev.magnitudes[0].resource_id = \
ev.magnitudes[0].resource_id.resource_id.replace(
"quakeml/gcmtid", "quakeml/magnitude/gcmtid")
# Fix up the moment tensor resource_ids.
mt.derived_origin_id = ev.origins[0].resource_id
mt.resource_id = mt.resource_id.resource_id.replace(
"focalmechanism", "momenttensor")
cat = Catalog()
cat.resource_id = ev.origins[0].resource_id.resource_id.replace(
"origin", "event_parameters")
cat.append(ev)
if output_folder:
event_name = os.path.join(output_folder, event_name)
cat.write(event_name, format="quakeml", validate=True)
print "Written file", event_name
