class TestSeriesService:
def setup(self):
self.connection_string = "sqlite:///:memory:"
self.series_service = SeriesService(self.connection_string, debug=False)
self.session = self.series_service._session_factory.get_session()
engine = self.series_service._session_factory.engine
test_util.build_db(engine)
"""
@pytest.fixture(scope="class", autouse=True)
def build_db(self):
"""
#Builds an empty sqlite (in-memory) database for testing
#:return: None
"""
# path to the ddl script for building the database
ddlpath= abspath(join(dirname(__file__), 'data/empty.sql'))
# create and empty sqlite database for testing
db = dbconnection.createConnection('sqlite', ':memory:')
# read the ddl script and remove the first (BEGIN TRANSACTION) and last (COMMIT) lines
ddl = open(ddlpath, 'r').read()
ddl = ddl.replace('BEGIN TRANSACTION;','')
ddl = ddl.replace('COMMIT;','')
# execute each statement to build the odm2 database
for line in ddl.split(');')[:-1]:
try:
db.engine.execute(line + ');')
except Exception as e:
print e
self.write = CreateODM2(db)
self.engine= db.engine
globals['write'] = self.write
globals['engine'] = self.engine
globals['db'] = db
# return self.write, self.engine
def setup(self):
self.writer = globals['write']
self.engine = globals['engine']
self.db = globals['db']
"""
def test_get_db_version(self):
version = test_util.add_version(self.session)
db_version = self.series_service.get_db_version()
assert version.version_number == db_version
def test_get_all_sites_empty(self):
sites = self.series_service.get_used_sites()
#assert len(sites) == 0
assert sites is None
def test_create_qualifier(self):
qual = Qualifier()
qual.code = "ABC123"
qual.description = "This is a test"
self.series_service.create_qualifier_by_qual(qual)
assert qual.id is not None
def test_get_qualifier_by_code(self):
assert self.series_service.get_all_qualifiers() == []
qual= self.series_service.create_qualifier("ABC123","This is a test")
db_qual = self.series_service.get_qualifier_by_code("ABC123")
assert qual.id == db_qual.id
def test_get_qualifiers(self):
assert self.series_service.get_all_qualifiers() == []
qual= self.series_service.create_qualifier("ABC123","This is a test")
db_qual = self.series_service.get_all_qualifiers()[0]
assert qual.id == db_qual.id
def test_get_all_sites(self):
assert self.series_service.get_used_sites() is None
site = test_util.add_site(self.session)
sites = self.series_service.get_used_sites()
assert sites is None
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
series = test_util.add_series(self.session)
site = series.site
sites = self.series_service.get_used_sites()
assert len(sites) == 1
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
def test_get_site_by_id_fail(self):
assert self.series_service.get_site_by_id(0) == None
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(10)
assert db_site == None
def test_get_site_by_id(self):
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(site.id)
assert db_site != None
assert site.code == db_site.code
def test_get_all_variables(self):
assert self.series_service.get_all_variables() == []
variable = test_util.add_variable(self.session)
variables = self.series_service.get_all_variables()
assert len(variables) == 1
assert variable.code == variables[0].code
def test_get_variable_by_id(self):
assert self.series_service.get_variable_by_id(10) == None
variable = test_util.add_variable(self.session)
db_var = self.series_service.get_variable_by_id(variable.id)
assert db_var != None
assert db_var.code == variable.code
def test_get_variables_by_site_code(self):
assert self.series_service.get_variables_by_site_code('ABC123') == []
series = test_util.add_series(self.session)
variable = series.variable
db_variables = self.series_service.get_variables_by_site_code(series.site_code)
assert db_variables != None
assert variable.code == db_variables[0].code
def test_get_all_units(self):
assert self.series_service.get_all_units() == []
unit = test_util.add_unit(self.session)
units = self.series_service.get_all_units()
assert len(units) == 1
assert unit.name == units[0].name
def test_get_unit_by_name(self):
assert self.series_service.get_unit_by_name("FAIL") == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_name(unit.name)
assert unit.id == db_unit.id
def test_get_unit_by_id(self):
assert self.series_service.get_unit_by_id(10) == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_id(unit.id)
assert unit.name == db_unit.name
def test_get_all_series(self):
assert self.series_service.get_all_series() == []
series = test_util.add_series(self.session)
all_series = self.series_service.get_all_series()
assert all_series != []
assert series.id == all_series[0].id
def test_get_series_by_id(self):
assert self.series_service.get_series_by_id(10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id(series.id)
assert series.id == db_series.id
def test_get_series_by_id_quint(self):
assert self.series_service.get_series_by_id_quint(10, 10, 10, 10, 10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id_quint(series.site_id, series.variable_id, series.method_id,
series.source_id, series.quality_control_level_id)
assert series.id == db_series.id
def test_series_exists(self):
assert self.series_service.series_exists_quint(10, 10, 10, 10, 10) == False
series = test_util.add_series(self.session)
site_id = series.site_id
var_id = series.variable_id
method_id = series.method_id
source_id = series.source_id
qcl_id = series.quality_control_level_id
assert self.series_service.series_exists_quint(site_id, var_id, method_id, source_id, qcl_id) == True
'''
def test_save_series(self):
series = Series()
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
series.site_id = site.id
series.variable_id = variable.id
series.method_id = method.id
series.source_id = source.id
series.quality_control_level_id = qcl.id
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
print series.variable_code
assert self.series_service.save_series(series)
assert self.series_service.series_exists(site.id, variable.id, method.id, source.id, qcl.id)
assert not self.series_service.save_series(series)
'''
def test_get_data_value_by_id(self):
assert self.series_service.get_data_value_by_id(10) == None
data_values = test_util.add_series(self.session).data_values
dv = data_values[0]
db_dv = self.series_service.get_data_value_by_id(dv.id)
assert dv.data_value == db_dv.data_value
def test_get_qcl_by_id(self):
assert self.series_service.get_qcl_by_id(10) == None
qcl = test_util.add_qcl(self.session)
db_qcl = self.series_service.get_qcl_by_id(qcl.id)
assert qcl.code == db_qcl.code
def test_get_all_qcls(self):
assert self.series_service.get_all_qcls() == []
qcl = test_util.add_qcl(self.session)
all_qcls = self.series_service.get_all_qcls()
assert len(all_qcls) == 1
assert qcl.id == all_qcls[0].id
def test_get_all_methods(self):
assert self.series_service.get_all_methods() == []
method = test_util.add_method(self.session)
all_methods = self.series_service.get_all_methods()
assert len(all_methods) == 1
assert method.id == all_methods[0].id
def test_get_method_by_id(self):
assert self.series_service.get_method_by_id(10) == None
method = test_util.add_method(self.session)
db_method = self.series_service.get_method_by_id(method.id)
assert method.description == db_method.description
def test_delete_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
self.series_service.delete_dvs([x.local_date_time for x in subset])
assert self.series_service.get_data_value_by_id(subset[0].id) == None
series = self.series_service.get_series_by_id(series.id) # Reload
assert len(series.data_values) == 5
def test_update_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
for i in range(len(subset)):
subset[i].data_value = 100
self.series_service.update_dvs(subset)
series = self.series_service.get_series_by_id(series.id)
assert series.data_values[0].data_value == 100
def test_create_new_series(self):
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
series = self.series_service.create_new_series(dvs, site.id, variable.id, method.id, source.id, qcl.id)
assert series != None
assert len(series.data_values) == 10
assert series.site_id == site.id
assert series.variable_id == variable.id
def test_update_series(self):
series = test_util.add_series(self.session)
series.site_code = "NEW"
series.variable_code = "NEW"
self.series_service.update_series(series)
series = self.series_service.get_series_by_id(series.id)
assert series.site_code == "NEW"
assert series.variable_code == "NEW"
def test_create_method(self):
description = "This tests creating a method"
link = "http://www.example.com"
method = self.series_service.create_method(description, link)
assert method.id != None
assert method.description == description
assert method.link == link
def test_create_variable(self):
unit = test_util.add_unit(self.session)
variable = self.series_service.create_variable("Code", "Name", "Speciation", unit.id, "SampleMedium",
"ValueType", True, # is_regular
5.0, # time_support
unit.id, # time_unit_id
"DataType", "GeneralCategory", -999.0) # no_data_value
assert variable.id != None
assert variable.code == "Code"
assert variable.variable_unit_id == unit.id
def test_create_qcl(self):
qcl = self.series_service.create_qcl("Code", "Definition", "Explanation")
assert qcl.id != None
assert qcl.code == "Code"
def test_delete_series(self):
series = test_util.add_series(self.session)
assert self.series_service.get_series_by_id(series.id) != None
self.series_service.delete_series(series)
assert self.series_service.get_series_by_id(series.id) == None
def test_delete_values(self):
series = test_util.add_series(self.session)
assert self.series_service.get_series_by_id(series.id) != None
self.series_service.delete_values_by_series(series)
val = self.series_service.get_series_by_id(series.id)
print val
assert val != None
def test_qcl_exists(self):
qcl = test_util.add_qcl(self.session)
assert self.series_service.qcl_exists(qcl) == True
qcl.code = "00000"
qcl.definition = "A new definition"
assert self.series_service.qcl_exists(qcl) == False
def test_method_exists(self):
method = test_util.add_method(self.session)
assert self.series_service.method_exists(method) == True
method.description = "A new description"
assert self.series_service.method_exists(method) == False
def test_variable_exists(self):
variable = test_util.add_variable(self.session)
assert self.series_service.variable_exists(variable)
variable.code = "00000"
variable.name = "A new name"
assert not self.series_service.variable_exists(variable)
class TestSeriesService:
def setup(self):
self.connection_string = "sqlite:///:memory:"
self.series_service = SeriesService(self.connection_string,
debug=False)
self.session = self.series_service._session_factory.get_session()
engine = self.series_service._session_factory.engine
test_util.build_db(engine)
"""
@pytest.fixture(scope="class", autouse=True)
def build_db(self):
"""
#Builds an empty sqlite (in-memory) database for testing
#:return: None
"""
# path to the ddl script for building the database
ddlpath= abspath(join(dirname(__file__), 'data/empty.sql'))
# create and empty sqlite database for testing
db = dbconnection.createConnection('sqlite', ':memory:')
# read the ddl script and remove the first (BEGIN TRANSACTION) and last (COMMIT) lines
ddl = open(ddlpath, 'r').read()
ddl = ddl.replace('BEGIN TRANSACTION;','')
ddl = ddl.replace('COMMIT;','')
# execute each statement to build the odm2 database
for line in ddl.split(');')[:-1]:
try:
db.engine.execute(line + ');')
except Exception as e:
print e
self.write = CreateODM2(db)
self.engine= db.engine
globals['write'] = self.write
globals['engine'] = self.engine
globals['db'] = db
# return self.write, self.engine
def setup(self):
self.writer = globals['write']
self.engine = globals['engine']
self.db = globals['db']
"""
def test_get_db_version(self):
version = test_util.add_version(self.session)
db_version = self.series_service.get_db_version()
assert version.version_number == db_version
def test_get_all_sites_empty(self):
sites = self.series_service.get_used_sites()
#assert len(sites) == 0
assert sites is None
def test_create_qualifier(self):
qual = Qualifier()
qual.code = "ABC123"
qual.description = "This is a test"
self.series_service.create_qualifier_by_qual(qual)
assert qual.id is not None
def test_get_qualifier_by_code(self):
assert self.series_service.get_all_qualifiers() == []
qual = self.series_service.create_qualifier("ABC123", "This is a test")
db_qual = self.series_service.get_qualifier_by_code("ABC123")
assert qual.id == db_qual.id
def test_get_qualifiers(self):
assert self.series_service.get_all_qualifiers() == []
qual = self.series_service.create_qualifier("ABC123", "This is a test")
db_qual = self.series_service.get_all_qualifiers()[0]
assert qual.id == db_qual.id
def test_get_all_sites(self):
assert self.series_service.get_used_sites() is None
site = test_util.add_site(self.session)
sites = self.series_service.get_used_sites()
assert sites is None
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
series = test_util.add_series(self.session)
site = series.site
sites = self.series_service.get_used_sites()
assert len(sites) == 1
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
def test_get_site_by_id_fail(self):
assert self.series_service.get_site_by_id(0) == None
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(10)
assert db_site == None
def test_get_site_by_id(self):
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(site.id)
assert db_site != None
assert site.code == db_site.code
def test_get_all_variables(self):
assert self.series_service.get_all_variables() == []
variable = test_util.add_variable(self.session)
variables = self.series_service.get_all_variables()
assert len(variables) == 1
assert variable.code == variables[0].code
def test_get_variable_by_id(self):
assert self.series_service.get_variable_by_id(10) == None
variable = test_util.add_variable(self.session)
db_var = self.series_service.get_variable_by_id(variable.id)
assert db_var != None
assert db_var.code == variable.code
def test_get_variables_by_site_code(self):
assert self.series_service.get_variables_by_site_code('ABC123') == []
series = test_util.add_series(self.session)
variable = series.variable
db_variables = self.series_service.get_variables_by_site_code(
series.site_code)
assert db_variables != None
assert variable.code == db_variables[0].code
def test_get_all_units(self):
assert self.series_service.get_all_units() == []
unit = test_util.add_unit(self.session)
units = self.series_service.get_all_units()
assert len(units) == 1
assert unit.name == units[0].name
def test_get_unit_by_name(self):
assert self.series_service.get_unit_by_name("FAIL") == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_name(unit.name)
assert unit.id == db_unit.id
def test_get_unit_by_id(self):
assert self.series_service.get_unit_by_id(10) == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_id(unit.id)
assert unit.name == db_unit.name
def test_get_all_series(self):
assert self.series_service.get_all_series() == []
series = test_util.add_series(self.session)
all_series = self.series_service.get_all_series()
assert all_series != []
assert series.id == all_series[0].id
def test_get_series_by_id(self):
assert self.series_service.get_series_by_id(10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id(series.id)
assert series.id == db_series.id
def test_get_series_by_id_quint(self):
assert self.series_service.get_series_by_id_quint(10, 10, 10, 10,
10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id_quint(
series.site_id, series.variable_id, series.method_id,
series.source_id, series.quality_control_level_id)
assert series.id == db_series.id
def test_series_exists(self):
assert self.series_service.series_exists_quint(10, 10, 10, 10,
10) == False
series = test_util.add_series(self.session)
site_id = series.site_id
var_id = series.variable_id
method_id = series.method_id
source_id = series.source_id
qcl_id = series.quality_control_level_id
assert self.series_service.series_exists_quint(site_id, var_id,
method_id, source_id,
qcl_id) == True
'''
def test_save_series(self):
series = Series()
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
series.site_id = site.id
series.variable_id = variable.id
series.method_id = method.id
series.source_id = source.id
series.quality_control_level_id = qcl.id
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
print series.variable_code
assert self.series_service.save_series(series)
assert self.series_service.series_exists(site.id, variable.id, method.id, source.id, qcl.id)
assert not self.series_service.save_series(series)
'''
def test_get_data_value_by_id(self):
assert self.series_service.get_data_value_by_id(10) == None
data_values = test_util.add_series(self.session).data_values
dv = data_values[0]
db_dv = self.series_service.get_data_value_by_id(dv.id)
assert dv.data_value == db_dv.data_value
def test_get_qcl_by_id(self):
assert self.series_service.get_qcl_by_id(10) == None
qcl = test_util.add_qcl(self.session)
db_qcl = self.series_service.get_qcl_by_id(qcl.id)
assert qcl.code == db_qcl.code
def test_get_all_qcls(self):
assert self.series_service.get_all_qcls() == []
qcl = test_util.add_qcl(self.session)
all_qcls = self.series_service.get_all_qcls()
assert len(all_qcls) == 1
assert qcl.id == all_qcls[0].id
def test_get_all_methods(self):
assert self.series_service.get_all_methods() == []
method = test_util.add_method(self.session)
all_methods = self.series_service.get_all_methods()
assert len(all_methods) == 1
assert method.id == all_methods[0].id
def test_get_method_by_id(self):
assert self.series_service.get_method_by_id(10) == None
method = test_util.add_method(self.session)
db_method = self.series_service.get_method_by_id(method.id)
assert method.description == db_method.description
def test_delete_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
self.series_service.delete_dvs([x.local_date_time for x in subset])
assert self.series_service.get_data_value_by_id(subset[0].id) == None
series = self.series_service.get_series_by_id(series.id) # Reload
assert len(series.data_values) == 5
def test_update_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
for i in range(len(subset)):
subset[i].data_value = 100
self.series_service.update_dvs(subset)
series = self.series_service.get_series_by_id(series.id)
assert series.data_values[0].data_value == 100
def test_create_new_series(self):
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
series = self.series_service.create_new_series(dvs, site.id,
variable.id, method.id,
source.id, qcl.id)
assert series != None
assert len(series.data_values) == 10
assert series.site_id == site.id
assert series.variable_id == variable.id
def test_update_series(self):
series = test_util.add_series(self.session)
series.site_code = "NEW"
series.variable_code = "NEW"
self.series_service.update_series(series)
series = self.series_service.get_series_by_id(series.id)
assert series.site_code == "NEW"
assert series.variable_code == "NEW"
def test_create_method(self):
description = "This tests creating a method"
link = "http://www.example.com"
method = self.series_service.create_method(description, link)
assert method.id != None
assert method.description == description
assert method.link == link
def test_create_variable(self):
unit = test_util.add_unit(self.session)
variable = self.series_service.create_variable(
"Code",
"Name",
"Speciation",
unit.id,
"SampleMedium",
"ValueType",
True, # is_regular
5.0, # time_support
unit.id, # time_unit_id
"DataType",
"GeneralCategory",
-999.0) # no_data_value
assert variable.id != None
assert variable.code == "Code"
assert variable.variable_unit_id == unit.id
def test_create_qcl(self):
qcl = self.series_service.create_qcl("Code", "Definition",
"Explanation")
assert qcl.id != None
assert qcl.code == "Code"
def test_delete_series(self):
series = test_util.add_series(self.session)
assert self.series_service.get_series_by_id(series.id) != None
self.series_service.delete_series(series)
assert self.series_service.get_series_by_id(series.id) == None
def test_delete_values(self):
series = test_util.add_series(self.session)
assert self.series_service.get_series_by_id(series.id) != None
self.series_service.delete_values_by_series(series)
val = self.series_service.get_series_by_id(series.id)
print val
assert val != None
def test_qcl_exists(self):
qcl = test_util.add_qcl(self.session)
assert self.series_service.qcl_exists(qcl) == True
qcl.code = "00000"
qcl.definition = "A new definition"
assert self.series_service.qcl_exists(qcl) == False
def test_method_exists(self):
method = test_util.add_method(self.session)
assert self.series_service.method_exists(method) == True
method.description = "A new description"
assert self.series_service.method_exists(method) == False
def test_variable_exists(self):
variable = test_util.add_variable(self.session)
assert self.series_service.variable_exists(variable)
variable.code = "00000"
variable.name = "A new name"
assert not self.series_service.variable_exists(variable)
class TestSeriesService:
def setup(self):
self.connection_string = "sqlite:///:memory:"
self.series_service = SeriesService(self.connection_string, debug=False)
self.session = self.series_service._session_factory.get_session()
engine = self.series_service._session_factory.engine
test_util.build_db(engine)
def test_get_db_version(self):
version = test_util.add_version(self.session)
db_version = self.series_service.get_db_version()
assert version.version_number == db_version
def test_get_all_sites_empty(self):
sites = self.series_service.get_used_sites()
#assert len(sites) == 0
assert sites is None
def test_create_qualifier(self):
qual = Qualifier()
qual.code = "ABC123"
qual.description = "This is a test"
self.series_service.create_qualifier_by_qual(qual)
assert qual.id is not None
def test_get_qualifiers(self):
assert self.series_service.get_all_qualifiers() == []
qual= self.series_service.create_qualifier("ABC123","This is a test")
db_qual = self.series_service.get_all_qualifiers()[0]
assert qual.id == db_qual.id
def test_get_all_sites(self):
assert self.series_service.get_used_sites() is None
site = test_util.add_site(self.session)
sites = self.series_service.get_used_sites()
assert sites is None
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
series = test_util.add_series(self.session)
site = series.site
sites = self.series_service.get_used_sites()
assert len(sites) == 1
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
def test_get_site_by_id_fail(self):
assert self.series_service.get_site_by_id(0) == None
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(10)
assert db_site == None
def test_get_site_by_id(self):
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(site.id)
assert db_site != None
assert site.code == db_site.code
def test_get_all_variables(self):
assert self.series_service.get_all_variables() == []
variable = test_util.add_variable(self.session)
variables = self.series_service.get_all_variables()
assert len(variables) == 1
assert variable.code == variables[0].code
def test_get_variable_by_id(self):
assert self.series_service.get_variable_by_id(10) == None
variable = test_util.add_variable(self.session)
db_var = self.series_service.get_variable_by_id(variable.id)
assert db_var != None
assert db_var.code == variable.code
def test_get_variables_by_site_code(self):
assert self.series_service.get_variables_by_site_code('ABC123') == []
series = test_util.add_series(self.session)
variable = series.variable
db_variables = self.series_service.get_variables_by_site_code(series.site_code)
assert db_variables != None
assert variable.code == db_variables[0].code
def test_get_all_units(self):
assert self.series_service.get_all_units() == []
unit = test_util.add_unit(self.session)
units = self.series_service.get_all_units()
assert len(units) == 1
assert unit.name == units[0].name
def test_get_unit_by_name(self):
assert self.series_service.get_unit_by_name("FAIL") == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_name(unit.name)
assert unit.id == db_unit.id
def test_get_unit_by_id(self):
assert self.series_service.get_unit_by_id(10) == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_id(unit.id)
assert unit.name == db_unit.name
def test_get_all_series(self):
assert self.series_service.get_all_series() == []
series = test_util.add_series(self.session)
all_series = self.series_service.get_all_series()
assert all_series != []
assert series.id == all_series[0].id
def test_get_series_by_id(self):
assert self.series_service.get_series_by_id(10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id(series.id)
assert series.id == db_series.id
def test_get_series_by_id_quint(self):
assert self.series_service.get_series_by_id_quint(10, 10, 10, 10, 10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id_quint(series.site_id, series.variable_id, series.method_id,
series.source_id, series.quality_control_level_id)
assert series.id == db_series.id
def test_series_exists(self):
assert self.series_service.series_exists_quint(10, 10, 10, 10, 10) == False
series = test_util.add_series(self.session)
site_id = series.site_id
var_id = series.variable_id
method_id = series.method_id
source_id = series.source_id
qcl_id = series.quality_control_level_id
assert self.series_service.series_exists_quint(site_id, var_id, method_id, source_id, qcl_id) == True
## TODO Unittest save_series, save_as, save_as_existing
'''
def test_save_series(self):
series = Series()
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
series.site_id = site.id
series.variable_id = variable.id
series.method_id = method.id
series.source_id = source.id
series.quality_control_level_id = qcl.id
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
print series.variable_code
assert self.series_service.save_series(series)
assert self.series_service.series_exists(site.id, variable.id, method.id, source.id, qcl.id)
assert not self.series_service.save_series(series)
'''
def test_get_data_value_by_id(self):
assert self.series_service.get_data_value_by_id(10) == None
data_values = test_util.add_series(self.session).data_values
dv = data_values[0]
db_dv = self.series_service.get_data_value_by_id(dv.id)
assert dv.data_value == db_dv.data_value
def test_get_qcl_by_id(self):
assert self.series_service.get_qcl_by_id(10) == None
qcl = test_util.add_qcl(self.session)
db_qcl = self.series_service.get_qcl_by_id(qcl.id)
assert qcl.code == db_qcl.code
def test_get_all_qcls(self):
assert self.series_service.get_all_qcls() == []
qcl = test_util.add_qcl(self.session)
all_qcls = self.series_service.get_all_qcls()
assert len(all_qcls) == 1
assert qcl.id == all_qcls[0].id
def test_get_all_methods(self):
assert self.series_service.get_all_methods() == []
method = test_util.add_method(self.session)
all_methods = self.series_service.get_all_methods()
assert len(all_methods) == 1
assert method.id == all_methods[0].id
def test_get_method_by_id(self):
assert self.series_service.get_method_by_id(10) == None
method = test_util.add_method(self.session)
db_method = self.series_service.get_method_by_id(method.id)
assert method.description == db_method.description
def test_delete_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
self.series_service.delete_dvs([x.id for x in subset])
assert self.series_service.get_data_value_by_id(subset[0].id) == None
series = self.series_service.get_series_by_id(series.id) # Reload
assert len(series.data_values) == 5
def test_update_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
for i in range(len(subset)):
subset[i].data_value = 100
self.series_service.update_dvs(subset)
series = self.series_service.get_series_by_id(series.id)
assert series.data_values[0].data_value == 100
def test_create_new_series(self):
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
series = self.series_service.create_new_series(dvs, site.id, variable.id, method.id, source.id, qcl.id)
assert series != None
assert len(series.data_values) == 10
assert series.site_id == site.id
assert series.variable_id == variable.id
def test_update_series(self):
series = test_util.add_series(self.session)
series.site_code = "NEW"
series.variable_code = "NEW"
self.series_service.update_series(series)
series = self.series_service.get_series_by_id(series.id)
assert series.site_code == "NEW"
assert series.variable_code == "NEW"
def test_create_method(self):
description = "This tests creating a method"
link = "http://www.example.com"
method = self.series_service.create_method(description, link)
assert method.id != None
assert method.description == description
assert method.link == link
def test_create_variable(self):
unit = test_util.add_unit(self.session)
variable = self.series_service.create_variable("Code", "Name", "Speciation", unit.id, "SampleMedium",
"ValueType", True, # is_regular
5.0, # time_support
unit.id, # time_unit_id
"DataType", "GeneralCategory", -999.0) # no_data_value
assert variable.id != None
assert variable.code == "Code"
assert variable.variable_unit_id == unit.id
def test_create_qcl(self):
qcl = self.series_service.create_qcl("Code", "Definition", "Explanation")
assert qcl.id != None
assert qcl.code == "Code"
def test_delete_series(self):
series = test_util.add_series(self.session)
assert self.series_service.get_series_by_id(series.id) != None
self.series_service.delete_series(series)
assert self.series_service.get_series_by_id(series.id) == None
def test_qcl_exists(self):
qcl = test_util.add_qcl(self.session)
assert self.series_service.qcl_exists(qcl) == True
qcl.code = "00000"
qcl.definition = "A new definition"
assert self.series_service.qcl_exists(qcl) == False
def test_method_exists(self):
method = test_util.add_method(self.session)
assert self.series_service.method_exists(method) == True
method.description = "A new description"
assert self.series_service.method_exists(method) == False
def test_variable_exists(self):
variable = test_util.add_variable(self.session)
assert self.series_service.variable_exists(variable)
variable.code = "00000"
variable.name = "A new name"
assert not self.series_service.variable_exists(variable)
class TestSeriesService:
def setup(self):
self.connection_string = "sqlite:///:memory:"
self.series_service = SeriesService(self.connection_string,
debug=False)
self.session = self.series_service._session_factory.get_session()
engine = self.series_service._session_factory.engine
test_util.build_db(engine)
def test_get_db_version(self):
version = test_util.add_version(self.session)
db_version = self.series_service.get_db_version()
assert version.version_number == db_version
def test_get_all_sites_empty(self):
sites = self.series_service.get_used_sites()
#assert len(sites) == 0
assert sites is None
def test_create_qualifier(self):
qual = Qualifier()
qual.code = "ABC123"
qual.description = "This is a test"
self.series_service.create_qualifier_by_qual(qual)
assert qual.id is not None
def test_get_qualifiers(self):
assert self.series_service.get_all_qualifiers() == []
qual = self.series_service.create_qualifier("ABC123", "This is a test")
db_qual = self.series_service.get_all_qualifiers()[0]
assert qual.id == db_qual.id
def test_get_all_sites(self):
assert self.series_service.get_used_sites() is None
site = test_util.add_site(self.session)
sites = self.series_service.get_used_sites()
assert sites is None
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
series = test_util.add_series(self.session)
site = series.site
sites = self.series_service.get_used_sites()
assert len(sites) == 1
if isinstance(sites, list) and len(sites) > 0:
assert site.code == sites[0].code
def test_get_site_by_id_fail(self):
assert self.series_service.get_site_by_id(0) == None
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(10)
assert db_site == None
def test_get_site_by_id(self):
site = test_util.add_site(self.session)
db_site = self.series_service.get_site_by_id(site.id)
assert db_site != None
assert site.code == db_site.code
def test_get_all_variables(self):
assert self.series_service.get_all_variables() == []
variable = test_util.add_variable(self.session)
variables = self.series_service.get_all_variables()
assert len(variables) == 1
assert variable.code == variables[0].code
def test_get_variable_by_id(self):
assert self.series_service.get_variable_by_id(10) == None
variable = test_util.add_variable(self.session)
db_var = self.series_service.get_variable_by_id(variable.id)
assert db_var != None
assert db_var.code == variable.code
def test_get_variables_by_site_code(self):
assert self.series_service.get_variables_by_site_code('ABC123') == []
series = test_util.add_series(self.session)
variable = series.variable
db_variables = self.series_service.get_variables_by_site_code(
series.site_code)
assert db_variables != None
assert variable.code == db_variables[0].code
def test_get_all_units(self):
assert self.series_service.get_all_units() == []
unit = test_util.add_unit(self.session)
units = self.series_service.get_all_units()
assert len(units) == 1
assert unit.name == units[0].name
def test_get_unit_by_name(self):
assert self.series_service.get_unit_by_name("FAIL") == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_name(unit.name)
assert unit.id == db_unit.id
def test_get_unit_by_id(self):
assert self.series_service.get_unit_by_id(10) == None
unit = test_util.add_unit(self.session)
db_unit = self.series_service.get_unit_by_id(unit.id)
assert unit.name == db_unit.name
def test_get_all_series(self):
assert self.series_service.get_all_series() == []
series = test_util.add_series(self.session)
all_series = self.series_service.get_all_series()
assert all_series != []
assert series.id == all_series[0].id
def test_get_series_by_id(self):
assert self.series_service.get_series_by_id(10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id(series.id)
assert series.id == db_series.id
def test_get_series_by_id_quint(self):
assert self.series_service.get_series_by_id_quint(10, 10, 10, 10,
10) == None
series = test_util.add_series(self.session)
db_series = self.series_service.get_series_by_id_quint(
series.site_id, series.variable_id, series.method_id,
series.source_id, series.quality_control_level_id)
assert series.id == db_series.id
def test_series_exists(self):
assert self.series_service.series_exists_quint(10, 10, 10, 10,
10) == False
series = test_util.add_series(self.session)
site_id = series.site_id
var_id = series.variable_id
method_id = series.method_id
source_id = series.source_id
qcl_id = series.quality_control_level_id
assert self.series_service.series_exists_quint(site_id, var_id,
method_id, source_id,
qcl_id) == True
'''
def test_save_series(self):
series = Series()
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
series.site_id = site.id
series.variable_id = variable.id
series.method_id = method.id
series.source_id = source.id
series.quality_control_level_id = qcl.id
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
print series.variable_code
assert self.series_service.save_series(series)
assert self.series_service.series_exists(site.id, variable.id, method.id, source.id, qcl.id)
assert not self.series_service.save_series(series)
'''
def test_get_data_value_by_id(self):
assert self.series_service.get_data_value_by_id(10) == None
data_values = test_util.add_series(self.session).data_values
dv = data_values[0]
db_dv = self.series_service.get_data_value_by_id(dv.id)
assert dv.data_value == db_dv.data_value
def test_get_qcl_by_id(self):
assert self.series_service.get_qcl_by_id(10) == None
qcl = test_util.add_qcl(self.session)
db_qcl = self.series_service.get_qcl_by_id(qcl.id)
assert qcl.code == db_qcl.code
def test_get_all_qcls(self):
assert self.series_service.get_all_qcls() == []
qcl = test_util.add_qcl(self.session)
all_qcls = self.series_service.get_all_qcls()
assert len(all_qcls) == 1
assert qcl.id == all_qcls[0].id
def test_get_all_methods(self):
assert self.series_service.get_all_methods() == []
method = test_util.add_method(self.session)
all_methods = self.series_service.get_all_methods()
assert len(all_methods) == 1
assert method.id == all_methods[0].id
def test_get_method_by_id(self):
assert self.series_service.get_method_by_id(10) == None
method = test_util.add_method(self.session)
db_method = self.series_service.get_method_by_id(method.id)
assert method.description == db_method.description
def test_delete_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
self.series_service.delete_dvs([x.id for x in subset])
assert self.series_service.get_data_value_by_id(subset[0].id) == None
series = self.series_service.get_series_by_id(series.id) # Reload
assert len(series.data_values) == 5
def test_update_dvs(self):
series = test_util.add_series(self.session)
dvs = series.data_values
subset = dvs[:5]
for i in range(len(subset)):
subset[i].data_value = 100
self.series_service.update_dvs(subset)
series = self.series_service.get_series_by_id(series.id)
assert series.data_values[0].data_value == 100
def test_create_new_series(self):
site = test_util.add_site(self.session)
variable = test_util.add_variable(self.session)
method = test_util.add_method(self.session)
source = test_util.add_source(self.session)
qcl = test_util.add_qcl(self.session)
dvs = []
for val in range(10):
dv = DataValue()
dv.data_value = val
dv.site_id = site.id
dv.variable_id = variable.id
dv.method_id = method.id
dv.source_id = source.id
dv.quality_control_level_id = qcl.id
dvs.append(dv)
series = self.series_service.create_new_series(dvs, site.id,
variable.id, method.id,
source.id, qcl.id)
assert series != None
assert len(series.data_values) == 10
assert series.site_id == site.id
assert series.variable_id == variable.id
def test_update_series(self):
series = test_util.add_series(self.session)
series.site_code = "NEW"
series.variable_code = "NEW"
self.series_service.update_series(series)
series = self.series_service.get_series_by_id(series.id)
assert series.site_code == "NEW"
assert series.variable_code == "NEW"
def test_create_method(self):
description = "This tests creating a method"
link = "http://www.example.com"
method = self.series_service.create_method(description, link)
assert method.id != None
assert method.description == description
assert method.link == link
def test_create_variable(self):
unit = test_util.add_unit(self.session)
variable = self.series_service.create_variable(
"Code",
"Name",
"Speciation",
unit.id,
"SampleMedium",
"ValueType",
True, # is_regular
5.0, # time_support
unit.id, # time_unit_id
"DataType",
"GeneralCategory",
-999.0) # no_data_value
assert variable.id != None
assert variable.code == "Code"
assert variable.variable_unit_id == unit.id
def test_create_qcl(self):
qcl = self.series_service.create_qcl("Code", "Definition",
"Explanation")
assert qcl.id != None
assert qcl.code == "Code"
def test_delete_series(self):
series = test_util.add_series(self.session)
assert self.series_service.get_series_by_id(series.id) != None
self.series_service.delete_series(series)
assert self.series_service.get_series_by_id(series.id) == None
def test_qcl_exists(self):
qcl = test_util.add_qcl(self.session)
assert self.series_service.qcl_exists(qcl) == True
qcl.code = "00000"
qcl.definition = "A new definition"
assert self.series_service.qcl_exists(qcl) == False
def test_method_exists(self):
method = test_util.add_method(self.session)
assert self.series_service.method_exists(method) == True
method.description = "A new description"
assert self.series_service.method_exists(method) == False
def test_variable_exists(self):
variable = test_util.add_variable(self.session)
assert self.series_service.variable_exists(variable)
variable.code = "00000"
variable.name = "A new name"
assert not self.series_service.variable_exists(variable)