def doAllSubmit(self, requests, client, test_should_pass=True,
omero_group=None):
da = DoAll()
da.requests = requests
rsp = self.doSubmit(da, client, test_should_pass=test_should_pass,
omero_group=omero_group)
return rsp
def prep_directory(client, mrepo):
"""
Create an empty FS directory by performing an import and
then deleting the created fileset.
"""
from omero.cmd import Delete2, DoAll
from omero.grid import ImportSettings
from omero.model import ChecksumAlgorithmI
from omero.model import FilesetI
from omero.model import FilesetEntryI
from omero.model import UploadJobI
fs = FilesetI()
fs.linkJob(UploadJobI())
entry = FilesetEntryI()
entry.clientPath = rstring("README.txt")
fs.addFilesetEntry(entry)
settings = ImportSettings()
settings.checksumAlgorithm = ChecksumAlgorithmI()
settings.checksumAlgorithm.value = rstring("SHA1-160")
proc = mrepo.importFileset(fs, settings)
try:
tmp = create_path()
prx = proc.getUploader(0)
try:
tmp.write_text("THIS IS A PLACEHOLDER")
hash = client.sha1(tmp)
with open(tmp, "r") as source:
client.write_stream(source, prx)
finally:
prx.close()
tmp.remove()
handle = proc.verifyUpload([hash])
try:
req = handle.getRequest()
fs = req.activity.parent
finally:
handle.close()
dir = unwrap(mrepo.treeList(fs.templatePrefix.val))
oid = dir.items()[0][1].get("id")
ofile = client.sf.getQueryService().get("OriginalFile", oid)
delete1 = Delete2(targetObjects={'Fileset': [fs.id.val]})
delete2 = Delete2(targetObjects={'OriginalFile': [ofile.id.val]})
doall = DoAll()
doall.requests = [delete1, delete2]
cb = client.submit(doall)
cb.close(True)
finally:
proc.close()
return fs.templatePrefix.val
def prep_directory(client, mrepo):
"""
Create an empty FS directory by performing an import and
then deleting the created fileset.
"""
from omero.cmd import Delete2, DoAll
from omero.grid import ImportSettings
from omero.model import ChecksumAlgorithmI
from omero.model import FilesetI
from omero.model import FilesetEntryI
from omero.model import UploadJobI
fs = FilesetI()
fs.linkJob(UploadJobI())
entry = FilesetEntryI()
entry.clientPath = rstring("README.txt")
fs.addFilesetEntry(entry)
settings = ImportSettings()
settings.checksumAlgorithm = ChecksumAlgorithmI()
settings.checksumAlgorithm.value = rstring("SHA1-160")
proc = mrepo.importFileset(fs, settings)
try:
tmp = create_path()
prx = proc.getUploader(0)
try:
tmp.write_text("THIS IS A PLACEHOLDER")
hash = client.sha1(tmp)
with open(tmp, "r") as source:
client.write_stream(source, prx)
finally:
prx.close()
tmp.remove()
handle = proc.verifyUpload([hash])
try:
req = handle.getRequest()
fs = req.activity.parent
finally:
handle.close()
dir = unwrap(mrepo.treeList(fs.templatePrefix.val))
oid = dir.items()[0][1].get("id")
ofile = client.sf.getQueryService().get("OriginalFile", oid)
delete1 = Delete2(targetObjects={"Fileset": [fs.id.val]})
delete2 = Delete2(targetObjects={"OriginalFile": [ofile.id.val]})
doall = DoAll()
doall.requests = [delete1, delete2]
cb = client.submit(doall)
cb.close(True)
finally:
proc.close()
return fs.templatePrefix.val
def doAllSubmit(self,
requests,
client,
test_should_pass=True,
omero_group=None):
da = DoAll()
da.requests = requests
rsp = self.doSubmit(da,
client,
test_should_pass=test_should_pass,
omero_group=omero_group)
return rsp
def doSubmit(self,
request,
client,
test_should_pass=True,
omero_group=None):
"""
Performs the request(s), waits on completion and checks that the
result is not an error. The request can either be a single command
or a list of commands. If the latter then the request list will be
wrapped in a DoAll.
"""
if isinstance(request, list):
request = DoAll(request)
sf = client.sf
if omero_group is not None:
prx = sf.submit(request, {'omero.group': str(omero_group)})
else:
prx = sf.submit(request)
assert State.FAILURE not in prx.getStatus().flags
cb = CmdCallbackI(client, prx)
cb.loop(20, 500)
assert prx.getResponse() is not None
rsp = prx.getResponse()
if test_should_pass:
if isinstance(rsp, ERR):
assert False, (
"Found ERR when test_should_pass==true: %s (%s) params=%s"
% (rsp.category, rsp.name, rsp.parameters))
assert State.FAILURE not in prx.getStatus().flags
else:
if isinstance(rsp, OK):
assert False, ("Found OK when test_should_pass==false: %s" %
rsp)
assert State.FAILURE in prx.getStatus().flags
return rsp
def doAllChgrp(self, requests, client):
da = DoAll()
da.requests = requests
rsp = self.doSubmit(da, client)
def doAllChgrp(self, requests, client):
da = DoAll()
da.requests = requests
rsp = self.doSubmit(da, client)