def roi(experimenter, experimenter_group, permissions):
o = RoiI()
o.id = rlong(1L)
o.name = rstring('the_name')
o.description = rstring('the_description')
o.details.owner = experimenter
o.details.group = experimenter_group
o.details.permissions = permissions
return o
def roi(experimenter, experimenter_group, permissions):
o = RoiI()
o.id = rlong(1L)
o.name = rstring('the_name')
o.description = rstring('the_description')
o.details.owner = experimenter
o.details.group = experimenter_group
o.details.permissions = permissions
return o
def roi(experimenter, experimenter_group, permissions, externalInfo):
o = RoiI()
o.id = rlong(1L)
o.name = rstring("the_name")
o.description = rstring("the_description")
o.details.owner = experimenter
o.details.group = experimenter_group
o.details.permissions = permissions
o.details.externalInfo = externalInfo
return o
def make_mask(x, y, h, w):
mask = MaskI()
mask.x = rdouble(x)
mask.y = rdouble(y)
mask.height = rdouble(h)
mask.width = rdouble(w)
mask.bytes = make_circle(h, w)
roi = RoiI()
roi.description = rstring("created by overlapping-masks.py")
roi.addShape(mask)
roi.image = image
roi = update_service.saveAndReturnObject(roi)
print(f"Roi:{roi.id.val}")
params.addId(image_id_src)
count = 0
for mask_src in query_service.findAllByQuery(query, params):
mask_dst = MaskI()
mask_dst.x = mask_src.x
mask_dst.y = mask_src.y
mask_dst.width = mask_src.width
mask_dst.height = mask_src.height
mask_dst.theZ = mask_src.theZ
mask_dst.theC = mask_src.theC
mask_dst.theT = mask_src.theT
mask_dst.bytes = mask_src.bytes
mask_dst.fillColor = mask_src.fillColor
mask_dst.transform = mask_src.transform
roi_dst = RoiI()
roi_dst.description = rstring(
"created by copy-masks script for original mask #{}".format(
mask_src.id.val))
roi_dst.image = ImageI(image_id_dst, False)
roi_dst.addShape(mask_dst)
update_service.saveObject(roi_dst)
count += 1
idr._closeSession()
local._closeSession()
print("from image #{} to #{}, mask count = {}".format(image_id_src,
image_id_dst, count))
