def test1184(self):
uuid = self.uuid()
client = self.new_client(perms="rw----")
share = client.sf.getShareService()
query = client.sf.getQueryService()
update = client.sf.getUpdateService()
admin = client.sf.getAdminService()
cont = client.sf.getContainerService()
ds = DatasetI()
ds.setName(rstring('test1184-ds-%s' % (uuid)))
for i in range(1,2001):
img = ImageI()
img.setName(rstring('img1184-%s' % (uuid)))
img.setAcquisitionDate(rtime(time.time()))
# Saving in one go
#dil = DatasetImageLinkI()
#dil.setParent(ds)
#dil.setChild(img)
#update.saveObject(dil)
ds.linkImage(img)
ds = update.saveAndReturnObject(ds)
c = cont.getCollectionCount(ds.__class__.__name__, ("imageLinks"), [ds.id.val], None)
assert c[ds.id.val] == 2000
page = 1
p = omero.sys.Parameters()
p.map = {}
p.map["eid"] = rlong(admin.getEventContext().userId)
p.map["oid"] = rlong(ds.id.val)
if page is not None:
f = omero.sys.Filter()
f.limit = rint(24)
f.offset = rint((int(page)-1)*24)
p.theFilter = f
sql = "select im from Image im join fetch im.details.owner join fetch im.details.group " \
"left outer join fetch im.datasetLinks dil left outer join fetch dil.parent d " \
"where d.id = :oid and im.details.owner.id=:eid order by im.id asc"
start = time.time()
res = query.findAllByQuery(sql,p)
assert 24 == len(res)
end = time.time()
elapsed = end - start
assert elapsed < 3.0,\
"Expected the test to complete in < 3 seconds, took: %f" % elapsed
def testIterators(self):
d = DatasetI()
image = ImageI()
image.linkDataset(d)
it = image.iterateDatasetLinks()
count = 0
for i in it:
count += 1
self.assert_(count == 1)
def testLinkingInPrivateGroup(self):
uuid = self.uuid()
group = self.new_group(perms="rw----")
client, user = self.new_client_and_user(group=group, admin=True)
update = client.sf.getUpdateService()
project = ProjectI()
project.setName(rstring("project1_%s" % uuid))
project = update.saveAndReturnObject(project)
dataset = DatasetI()
dataset.setName(rstring("dataset1_%s" % uuid))
dataset = update.saveAndReturnObject(dataset)
links = []
l = ProjectDatasetLinkI()
l.setChild(dataset)
l.setParent(project)
links.append(l)
update.saveAndReturnArray(links)
def testLinkingInPrivateGroup(self):
uuid = self.uuid()
group = self.new_group(perms="rw----")
client, user = self.new_client_and_user(group=group, admin=True)
update = client.sf.getUpdateService()
project = ProjectI()
project.setName(rstring("project1_%s" % uuid))
project = update.saveAndReturnObject(project)
dataset = DatasetI()
dataset.setName(rstring("dataset1_%s" % uuid))
dataset = update.saveAndReturnObject(dataset)
links = []
l = ProjectDatasetLinkI()
l.setChild(dataset)
l.setParent(project)
links.append(l)
update.saveAndReturnArray(links)
def test1072(self):
#create two users where both are in the same active group
admin = self.root.sf.getAdminService()
uuid = admin.getEventContext().sessionUuid
new_gr = self.new_group(perms="rwr---")
c1, test_user = self.new_client_and_user(new_gr)
c2, test_user2 = self.new_client_and_user(new_gr)
#login as user1
update = c1.sf.getUpdateService()
pr1 = ProjectI()
pr1.setName(rstring('test1072-pr1-%s' % (uuid)))
pr1 = update.saveAndReturnObject(pr1)
pr1.unload()
#datasets
ds1 = DatasetI()
ds1.setName(rstring('test1072-ds1-%s' % (uuid)))
ds1 = update.saveAndReturnObject(ds1)
ds1.unload()
pdl1 = ProjectDatasetLinkI()
pdl1.setParent(pr1)
pdl1.setChild(ds1)
update.saveObject(pdl1)
#login as user2
pojos = c2.sf.getContainerService()
assert c2.sf.getAdminService().getEventContext()
#print c1.sf.getAdminService().getEventContext()
p = omero.sys.ParametersI()
p.grp( rlong(c2.sf.getAdminService().getEventContext().groupId) )
pojos.loadContainerHierarchy("Project",None, p)
def test1184(self):
uuid = self.uuid()
client = self.new_client(perms="rw----")
share = client.sf.getShareService()
query = client.sf.getQueryService()
update = client.sf.getUpdateService()
admin = client.sf.getAdminService()
cont = client.sf.getContainerService()
ds = DatasetI()
ds.setName(rstring('test1184-ds-%s' % (uuid)))
for i in range(1, 2001):
img = ImageI()
img.setName(rstring('img1184-%s' % (uuid)))
img.setAcquisitionDate(rtime(time.time()))
# Saving in one go
#dil = DatasetImageLinkI()
#dil.setParent(ds)
#dil.setChild(img)
#update.saveObject(dil)
ds.linkImage(img)
ds = update.saveAndReturnObject(ds)
c = cont.getCollectionCount(ds.__class__.__name__, ("imageLinks"),
[ds.id.val], None)
self.assert_(c[ds.id.val] == 2000)
page = 1
p = omero.sys.Parameters()
p.map = {}
p.map["eid"] = rlong(admin.getEventContext().userId)
p.map["oid"] = rlong(ds.id.val)
if page is not None:
f = omero.sys.Filter()
f.limit = rint(24)
f.offset = rint((int(page) - 1) * 24)
p.theFilter = f
sql = "select im from Image im join fetch im.details.owner join fetch im.details.group " \
"left outer join fetch im.datasetLinks dil left outer join fetch dil.parent d " \
"where d.id = :oid and im.details.owner.id=:eid order by im.id asc"
start = time.time()
res = query.findAllByQuery(sql, p)
self.assertEquals(24, len(res))
end = time.time()
elapsed = end - start
self.assertTrue(
elapsed < 3.0,
"Expected the test to complete in < 3 seconds, took: %f" % elapsed)
def test1072(self):
#create two users where both are in the same active group
admin = self.root.sf.getAdminService()
uuid = admin.getEventContext().sessionUuid
new_gr = self.new_group(perms="rwr---")
c1, test_user = self.new_client_and_user(new_gr)
c2, test_user2 = self.new_client_and_user(new_gr)
#login as user1
update = c1.sf.getUpdateService()
pr1 = ProjectI()
pr1.setName(rstring('test1072-pr1-%s' % (uuid)))
pr1 = update.saveAndReturnObject(pr1)
pr1.unload()
#datasets
ds1 = DatasetI()
ds1.setName(rstring('test1072-ds1-%s' % (uuid)))
ds1 = update.saveAndReturnObject(ds1)
ds1.unload()
pdl1 = ProjectDatasetLinkI()
pdl1.setParent(pr1)
pdl1.setChild(ds1)
update.saveObject(pdl1)
#login as user2
pojos = c2.sf.getContainerService()
self.assert_(c2.sf.getAdminService().getEventContext())
#print c1.sf.getAdminService().getEventContext()
p = omero.sys.ParametersI()
p.grp(rlong(c2.sf.getAdminService().getEventContext().groupId))
pojos.loadContainerHierarchy("Project", None, p)
def test1071_1(self):
admin = self.root.sf.getAdminService()
common_group = self.new_group(perms="rwrw--")
c1 = self.new_client(common_group)
c2 = self.new_client(common_group)
c1_pojos = c1.sf.getContainerService()
c1_query = c1.sf.getQueryService()
c1_update = c1.sf.getUpdateService()
c1_uuid = c1.sf.getAdminService().getEventContext().sessionUuid
c2_pojos = c2.sf.getContainerService()
c2_query = c2.sf.getQueryService()
c2_update = c2.sf.getUpdateService()
c2_uuid = c2.sf.getAdminService().getEventContext().sessionUuid
#projects
pr1 = ProjectI()
pr1.setName(rstring('test1071-pr1-%s' % (c1_uuid)))
pr1 = c1_update.saveAndReturnObject(pr1)
pr1.unload()
pr2 = ProjectI()
pr2.setName(rstring('test1071-pr2-%s' % (c2_uuid)))
pr2 = c2_update.saveAndReturnObject(pr2)
pr2.unload()
#datasets
ds1 = DatasetI()
ds1.setName(rstring('test1071-ds1-%s' % (c1_uuid)))
ds1 = c1_update.saveAndReturnObject(ds1)
ds1.unload()
ds2 = DatasetI()
ds2.setName(rstring('test1071-ds2-%s' % (c2_uuid)))
ds2 = c2_update.saveAndReturnObject(ds2)
ds2.unload()
#images
im2 = ImageI()
im2.setName(rstring('test1071-im2-%s' % (c2_uuid)))
im2.acquisitionDate = rtime(0)
im2 = c2_update.saveAndReturnObject(im2)
im2.unload()
#links
# im2 owned by u2
#
# im2 -> ds2 --> pr2 (owned by u2)
# |
# \-> ds1 --> pr1 (owned by u1)
#
pdl1 = ProjectDatasetLinkI()
pdl1.setParent(pr1)
pdl1.setChild(ds1)
c1_update.saveObject(pdl1)
pdl2 = ProjectDatasetLinkI()
pdl2.setParent(pr2)
pdl2.setChild(ds2)
c2_update.saveObject(pdl2)
dil2 = DatasetImageLinkI()
dil2.setParent(ds2)
dil2.setChild(im2)
c2_update.saveObject(dil2)
dil1 = DatasetImageLinkI()
dil1.setParent(ds1)
dil1.setChild(im2)
c1_update.saveObject(dil1)
#test:
hier = c2_pojos.findContainerHierarchies("Project", [long(im2.id.val)], None)
assert 2 == len(hier), "size of hier != 2: %s" % [type(x) for x in hier]
for c in hier:
if c.id.val == pr1.id.val and isinstance(c, ProjectI):
assert 1 == c.sizeOfDatasetLinks()
for pdl in c.copyDatasetLinks():
assert 1 == pdl.child.sizeOfImageLinks()
for dil in pdl.child.copyImageLinks():
assert dil.child.id.val == im2.id.val
elif c.id.val == pr2.id.val and isinstance(c, ProjectI):
assert 1 == c.sizeOfDatasetLinks()
elif c.id.val == ds3.id.val and isinstance(c, DatasetI):
assert 1 == c.sizeOfImageLinks()
def testLinkingAndUnlinking(self):
d = DatasetI()
i = ImageI()
d.linkImage(i)
assert d.sizeOfImageLinks() == 1
d.unlinkImage(i)
assert d.sizeOfImageLinks() == 0
d = DatasetI()
i = ImageI()
d.linkImage(i)
assert i.sizeOfDatasetLinks() == 1
i.unlinkDataset(d)
assert d.sizeOfImageLinks() == 0
d = DatasetI()
i = ImageI()
dil = DatasetImageLinkI()
dil.link(d, i)
d.addDatasetImageLink(dil, False)
assert d.sizeOfImageLinks() == 1
assert i.sizeOfDatasetLinks() == 0
def testLinkingAndUnlinking(self):
d = DatasetI()
i = ImageI()
d.linkImage(i)
self.assert_( d.sizeOfImageLinks() == 1 )
d.unlinkImage(i)
self.assert_( d.sizeOfImageLinks() == 0 )
d = DatasetI()
i = ImageI()
d.linkImage(i)
self.assert_( i.sizeOfDatasetLinks() == 1 )
i.unlinkDataset(d)
self.assert_( d.sizeOfImageLinks() == 0 )
d = DatasetI()
i = ImageI()
dil = DatasetImageLinkI()
dil.link(d,i)
d.addDatasetImageLink(dil, False)
self.assert_( d.sizeOfImageLinks() == 1 )
self.assert_( i.sizeOfDatasetLinks() == 0 )
def test1071_1(self):
admin = self.root.sf.getAdminService()
common_group = self.new_group(perms="rwrw--")
c1 = self.new_client(common_group)
c2 = self.new_client(common_group)
c1_pojos = c1.sf.getContainerService()
c1_query = c1.sf.getQueryService()
c1_update = c1.sf.getUpdateService()
c1_uuid = c1.sf.getAdminService().getEventContext().sessionUuid
c2_pojos = c2.sf.getContainerService()
c2_query = c2.sf.getQueryService()
c2_update = c2.sf.getUpdateService()
c2_uuid = c2.sf.getAdminService().getEventContext().sessionUuid
#projects
pr1 = ProjectI()
pr1.setName(rstring('test1071-pr1-%s' % (c1_uuid)))
pr1 = c1_update.saveAndReturnObject(pr1)
pr1.unload()
pr2 = ProjectI()
pr2.setName(rstring('test1071-pr2-%s' % (c2_uuid)))
pr2 = c2_update.saveAndReturnObject(pr2)
pr2.unload()
#datasets
ds1 = DatasetI()
ds1.setName(rstring('test1071-ds1-%s' % (c1_uuid)))
ds1 = c1_update.saveAndReturnObject(ds1)
ds1.unload()
ds2 = DatasetI()
ds2.setName(rstring('test1071-ds2-%s' % (c2_uuid)))
ds2 = c2_update.saveAndReturnObject(ds2)
ds2.unload()
#images
im2 = ImageI()
im2.setName(rstring('test1071-im2-%s' % (c2_uuid)))
im2.acquisitionDate = rtime(0)
im2 = c2_update.saveAndReturnObject(im2)
im2.unload()
#links
# im2 owned by u2
#
# im2 -> ds2 --> pr2 (owned by u2)
# |
# \-> ds1 --> pr1 (owned by u1)
#
pdl1 = ProjectDatasetLinkI()
pdl1.setParent(pr1)
pdl1.setChild(ds1)
c1_update.saveObject(pdl1)
pdl2 = ProjectDatasetLinkI()
pdl2.setParent(pr2)
pdl2.setChild(ds2)
c2_update.saveObject(pdl2)
dil2 = DatasetImageLinkI()
dil2.setParent(ds2)
dil2.setChild(im2)
c2_update.saveObject(dil2)
dil1 = DatasetImageLinkI()
dil1.setParent(ds1)
dil1.setChild(im2)
c1_update.saveObject(dil1)
#test:
hier = c2_pojos.findContainerHierarchies("Project", [long(im2.id.val)],
None)
self.assertEquals(2, len(hier),
"size of hier != 2: %s" % [type(x) for x in hier])
for c in hier:
if c.id.val == pr1.id.val and isinstance(c, ProjectI):
self.assertEquals(1, c.sizeOfDatasetLinks())
for pdl in c.copyDatasetLinks():
self.assertEquals(1, pdl.child.sizeOfImageLinks())
for dil in pdl.child.copyImageLinks():
self.assert_(dil.child.id.val == im2.id.val)
elif c.id.val == pr2.id.val and isinstance(c, ProjectI):
self.assertEquals(1, c.sizeOfDatasetLinks())
elif c.id.val == ds3.id.val and isinstance(c, DatasetI):
self.assertEquals(1, c.sizeOfImageLinks())
def test1071(self):
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
pojos = self.root.sf.getContainerService()
query = self.root.sf.getQueryService()
update = self.root.sf.getUpdateService()
#projects
pr1 = ProjectI()
pr1.setName(rstring('test1071-pr1-%s' % (uuid)))
pr1 = update.saveAndReturnObject(pr1)
pr1.unload()
pr2 = ProjectI()
pr2.setName(rstring('test1071-pr2-%s' % (uuid)))
pr2 = update.saveAndReturnObject(pr2)
pr2.unload()
#datasets
ds1 = DatasetI()
ds1.setName(rstring('test1071-ds1-%s' % (uuid)))
ds1 = update.saveAndReturnObject(ds1)
ds1.unload()
ds2 = DatasetI()
ds2.setName(rstring('test1071-ds2-%s' % (uuid)))
ds2 = update.saveAndReturnObject(ds2)
ds2.unload()
ds3 = DatasetI()
ds3.setName(rstring('test1071-ds3-%s' % (uuid)))
ds3 = update.saveAndReturnObject(ds3)
ds3.unload()
#images
im2 = ImageI()
im2.setName(rstring('test1071-im2-%s' % (uuid)))
im2.acquisitionDate = rtime(0)
im2 = update.saveAndReturnObject(im2)
im2.unload()
#links
#
# im2 -> ds3
# +-> ds2 --> pr2
# | \
# \-> ds1 --> pr1
#
pdl1 = ProjectDatasetLinkI()
pdl1.setParent(pr1)
pdl1.setChild(ds1)
update.saveObject(pdl1)
pdl2 = ProjectDatasetLinkI()
pdl2.setParent(pr1)
pdl2.setChild(ds2)
update.saveObject(pdl2)
pdl3 = ProjectDatasetLinkI()
pdl3.setParent(pr2)
pdl3.setChild(ds2)
update.saveObject(pdl3)
dil4 = DatasetImageLinkI()
dil4.setParent(ds1)
dil4.setChild(im2)
update.saveObject(dil4)
dil5 = DatasetImageLinkI()
dil5.setParent(ds2)
dil5.setChild(im2)
update.saveObject(dil5)
dil6 = DatasetImageLinkI()
dil6.setParent(ds3)
dil6.setChild(im2)
update.saveObject(dil6)
#test:
hier = pojos.findContainerHierarchies("Project", [long(im2.id.val)],
None)
self.assertEquals(3, len(hier),
"len of hier != 3: %s" % [type(x) for x in hier])
for c in hier:
if c.id.val == pr1.id.val and isinstance(c, ProjectI):
self.assert_(c.sizeOfDatasetLinks() == 2,
"length 2 != " + str(c.sizeOfDatasetLinks()))
for pdl in c.copyDatasetLinks():
self.assert_(pdl.child.sizeOfImageLinks() == 1)
for dil in pdl.child.copyImageLinks():
self.assert_(dil.child.id.val == im2.id.val)
elif c.id.val == pr2.id.val and isinstance(c, ProjectI):
self.assert_(c.sizeOfDatasetLinks() == 1)
elif c.id.val == ds3.id.val and isinstance(c, DatasetI):
self.assert_(c.sizeOfImageLinks() == 1)
def testLinkingAndUnlinking(self):
d = DatasetI()
i = ImageI()
d.linkImage(i)
self.assert_(d.sizeOfImageLinks() == 1)
d.unlinkImage(i)
self.assert_(d.sizeOfImageLinks() == 0)
d = DatasetI()
i = ImageI()
d.linkImage(i)
self.assert_(i.sizeOfDatasetLinks() == 1)
i.unlinkDataset(d)
self.assert_(d.sizeOfImageLinks() == 0)
d = DatasetI()
i = ImageI()
dil = DatasetImageLinkI()
dil.link(d, i)
d.addDatasetImageLink(dil, False)
self.assert_(d.sizeOfImageLinks() == 1)
self.assert_(i.sizeOfDatasetLinks() == 0)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from omero_model_ImageI import ImageI
from omero_model_DatasetI import DatasetI
image = ImageI()
dataset = DatasetI()
link = dataset.linkImage(image)
for link in image.iterateDatasetLinks():
link.getChild().getName()
def testLinkingAndUnlinking(self):
d = DatasetI()
i = ImageI()
d.linkImage(i)
assert d.sizeOfImageLinks() == 1
d.unlinkImage(i)
assert d.sizeOfImageLinks() == 0
d = DatasetI()
i = ImageI()
d.linkImage(i)
assert i.sizeOfDatasetLinks() == 1
i.unlinkDataset(d)
assert d.sizeOfImageLinks() == 0
d = DatasetI()
i = ImageI()
dil = DatasetImageLinkI()
dil.link(d, i)
d.addDatasetImageLink(dil, False)
assert d.sizeOfImageLinks() == 1
assert i.sizeOfDatasetLinks() == 0
def test1071(self):
uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
pojos = self.root.sf.getContainerService()
query = self.root.sf.getQueryService()
update = self.root.sf.getUpdateService()
#projects
pr1 = ProjectI()
pr1.setName(rstring('test1071-pr1-%s' % (uuid)))
pr1 = update.saveAndReturnObject(pr1)
pr1.unload()
pr2 = ProjectI()
pr2.setName(rstring('test1071-pr2-%s' % (uuid)))
pr2 = update.saveAndReturnObject(pr2)
pr2.unload()
#datasets
ds1 = DatasetI()
ds1.setName(rstring('test1071-ds1-%s' % (uuid)))
ds1 = update.saveAndReturnObject(ds1)
ds1.unload()
ds2 = DatasetI()
ds2.setName(rstring('test1071-ds2-%s' % (uuid)))
ds2 = update.saveAndReturnObject(ds2)
ds2.unload()
ds3 = DatasetI()
ds3.setName(rstring('test1071-ds3-%s' % (uuid)))
ds3 = update.saveAndReturnObject(ds3)
ds3.unload()
#images
im2 = ImageI()
im2.setName(rstring('test1071-im2-%s' % (uuid)))
im2.acquisitionDate = rtime(0)
im2 = update.saveAndReturnObject(im2)
im2.unload()
#links
#
# im2 -> ds3
# +-> ds2 --> pr2
# | \
# \-> ds1 --> pr1
#
pdl1 = ProjectDatasetLinkI()
pdl1.setParent(pr1)
pdl1.setChild(ds1)
update.saveObject(pdl1)
pdl2 = ProjectDatasetLinkI()
pdl2.setParent(pr1)
pdl2.setChild(ds2)
update.saveObject(pdl2)
pdl3 = ProjectDatasetLinkI()
pdl3.setParent(pr2)
pdl3.setChild(ds2)
update.saveObject(pdl3)
dil4 = DatasetImageLinkI()
dil4.setParent(ds1)
dil4.setChild(im2)
update.saveObject(dil4)
dil5 = DatasetImageLinkI()
dil5.setParent(ds2)
dil5.setChild(im2)
update.saveObject(dil5)
dil6 = DatasetImageLinkI()
dil6.setParent(ds3)
dil6.setChild(im2)
update.saveObject(dil6)
#test:
hier = pojos.findContainerHierarchies("Project", [long(im2.id.val)], None)
assert 3 == len(hier), "len of hier != 3: %s" % [type(x) for x in hier]
for c in hier:
if c.id.val == pr1.id.val and isinstance(c, ProjectI):
assert c.sizeOfDatasetLinks() == 2, "length 2 != " + str(c.sizeOfDatasetLinks())
for pdl in c.copyDatasetLinks():
assert pdl.child.sizeOfImageLinks() == 1
for dil in pdl.child.copyImageLinks():
assert dil.child.id.val == im2.id.val
elif c.id.val == pr2.id.val and isinstance(c, ProjectI):
assert c.sizeOfDatasetLinks() == 1
elif c.id.val == ds3.id.val and isinstance(c, DatasetI):
assert c.sizeOfImageLinks() == 1
import omero
from omero_model_ImageI import ImageI
from omero_model_DatasetI import DatasetI
from omero_model_DatasetImageLinkI import DatasetImageLinkI
image = ImageI()
dataset = DatasetI()
link = dataset.linkImage(image)
for link in image.iterateDatasetLinks():
link.getChild().getName();
