compr_error[p + 2, t] = compr_result[1]
compr_error_bar = float(delay_compression)/nfreq * np.array([compr_result[3][i,i] for i in range(delay_compression)])**.5
compr_flags[p + 2, t, compr_error_bar > min(compr_error_bar) * 1.05] = True
print "Done. %fmin"%(float(time.time()-timer)/60.)
sys.stdout.flush()
#######save uvs
print FILENAME + " MSG: saving compressed uv files",
sys.stdout.flush()
if len(wantpols.keys()) == 1:
compr_uvfile = oppath + '/' + dataano + "_%s.uvOE"%pol
else:
compr_uvfile = oppath + '/' + dataano + ".uvOE"
uv=ap.miriad.UV(uvfiles[0])
omni.exportuv(compr_uvfile, compressed_data, compr_flags, list(wantpols.values()) + list(crosspols.values()), jd, uv['inttime'], uv['sfreq'], uv['sdf'], sa.lat, sa.lon, overwrite=False, comment=ano)
del(uv)
print "Done."
sys.stdout.flush()
if create_new_uvs:
print FILENAME + " MSG: saving new uv files",
sys.stdout.flush()
infos = {}
for pol in wantpols.keys():
infos[pol[0]] = omni.read_redundantinfo(infopaths[pol])
for uvfile in uvfiles:
omni.apply_omnigain_uvs([uvfile], omnigains, calibrators[wantpols.keys()[0]].totalVisibilityId, infos, oppath, ano, adds= adds, verbose = True, comment = '_'.join(sys.argv), flags = flags, overwrite = overwrite_uvs)
print "Done."
sys.stdout.flush()
print "Done. %fmin" % (float(time.time() - timer) / 60.)
sys.stdout.flush()
#######save uvs
print FILENAME + " MSG: saving compressed uv files",
sys.stdout.flush()
if len(wantpols.keys()) == 1:
compr_uvfile = oppath + '/' + dataano + "_%s.uvOEE" % pol
else:
compr_uvfile = oppath + '/' + dataano + ".uvOEE"
uv = ap.miriad.UV(uvfiles[0])
jd = np.array(jd)
deljd = np.mean(jd[1:] - jd[:-1])
new_jd = np.arange(compr_shape[1])**2 * deljd / data.shape[1]
omni.exportuv(compr_uvfile,
compressed_data[:, delay_compression:-delay_compression],
compr_flags[:, delay_compression:-delay_compression],
wantpols.values(),
new_jd[delay_compression:-delay_compression],
uv['inttime'],
uv['sfreq'],
uv['sdf'],
sa.lat,
sa.lon,
overwrite=False,
comment=ano)
del (uv)
print "Done."
sys.stdout.flush()
print '.',
sys.stdout.flush()
flag = rawflag[p, :, f].all(axis = -1)
badbl = np.sum(rawflag[p, :, f], axis = 0) > np.sum(flag)
compr_result = omni.deconvolve_spectra2(data[p, :, f], ~flag, (compr_shape[1]+1)/2, correction_weight=1e-6)
compressed_data[p, :, f] = float(compr_shape[1])/nfreq * compr_result[0]
compr_error[p,f] = compr_result[1]
compr_error_bar = float(compr_shape[1])/nfreq * np.array([compr_result[3][i,i] for i in range(compr_shape[1])])**.5
compr_flags[p, compr_error_bar > min(compr_error_bar) * 1.05, f] = True
compr_flags[p, :, f, badbl] = True
print "Done. %fmin"%(float(time.time()-timer)/60.)
sys.stdout.flush()
#######save uvs
print FILENAME + " MSG: saving compressed uv files",
sys.stdout.flush()
if len(wantpols.keys()) == 1:
compr_uvfile = oppath + '/' + dataano + "_%s.uvOEE"%pol
else:
compr_uvfile = oppath + '/' + dataano + ".uvOEE"
uv=ap.miriad.UV(uvfiles[0])
jd=np.array(jd)
deljd = np.mean(jd[1:] - jd[:-1])
new_jd = np.arange(compr_shape[1])**2 * deljd / data.shape[1]
omni.exportuv(compr_uvfile, compressed_data[:,delay_compression:-delay_compression], compr_flags[:,delay_compression:-delay_compression], wantpols.values(), new_jd[delay_compression:-delay_compression], uv['inttime'], uv['sfreq'], uv['sdf'], sa.lat, sa.lon, overwrite=False, comment=ano)
del(uv)
print "Done."
sys.stdout.flush()
sys.stdout.flush()
#######save uvs
print FILENAME + " MSG: saving compressed uv files",
sys.stdout.flush()
if len(wantpols.keys()) == 1:
compr_uvfile = oppath + '/' + dataano + "_%s.uvOE" % pol
else:
compr_uvfile = oppath + '/' + dataano + ".uvOE"
uv = ap.miriad.UV(uvfiles[0])
omni.exportuv(compr_uvfile,
compressed_data,
compr_flags,
wantpols.values(),
jd,
uv['inttime'],
uv['sfreq'],
uv['sdf'],
sa.lat,
sa.lon,
overwrite=False,
comment=ano)
del (uv)
print "Done."
sys.stdout.flush()
if create_new_uvs:
print FILENAME + " MSG: saving new uv files",
sys.stdout.flush()
infos = {}
for pol in wantpols.keys():
infos[pol[0]] = omni.read_redundantinfo(infopaths[pol])
