def test_go_rule28():
config = assocparser.AssocParserConfig(ontology=ontology)
a = ["blah"] * 15
a[3] = ""
a[4] = "GO:0005975"
a[8] = "P"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule28().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assert test_result.result == assoc
a = ["blah"] * 15
a[3] = ""
a[4] = "GO:0005975"
a[8] = "C"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule28().test(assoc, config)
assert test_result.result_type == qc.ResultType.WARNING
fixed_assoc = copy.deepcopy(assoc)
fixed_assoc.aspect = "P"
assert test_result.result == fixed_assoc
assert test_result.message == "Found violation of: `Aspect can only be one of C, P, F` but was repaired"
def test_go_rule28():
config = all_rules_config(ontology=ontology)
assoc = make_annotation(goid="GO:0005975", evidence="IDA",
aspect="P").associations[0]
test_result = qc.GoRule28().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assert test_result.result == assoc
assoc = make_annotation(goid="GO:0005975", evidence="IDA",
aspect="C").associations[0]
test_result = qc.GoRule28().test(assoc, config)
assert test_result.result_type == qc.ResultType.WARNING
fixed_assoc = copy.deepcopy(assoc)
fixed_assoc.aspect = "P"
assert test_result.result == fixed_assoc
assert test_result.message == "Found violation of: `Aspect can only be one of C, P, F` but was repaired"
def test_go_rule28():
config = assocparser.AssocParserConfig(ontology=ontology)
a = ["blah"] * 16
a[4] = "GO:0005975"
a[8] = "P"
test_result = qc.GoRule28().test(a, config)
assert test_result.result_type == qc.ResultType.PASS
assert test_result.result == a
a = ["blah"] * 16
a[4] = "GO:0005975"
a[8] = "C"
test_result = qc.GoRule28().test(a, config)
assert test_result.result_type == qc.ResultType.WARNING
fixed_a = a
fixed_a[8] = "P"
assert test_result.result == fixed_a
assert test_result.message == "Found violation of: `Aspect can only be one of C, P, F` but was repaired"