def test_go_rule29():
# Nov 11, 1990, more than a year old
assoc = make_annotation(evidence="IEA", date="19901111").associations[0]
## Base test: old IEA.
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
## Pass if not IEA
assoc.evidence.type = Curie.from_str("ECO:0000305") # Not IEA
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
## Pass if only a half year old.
now = datetime.datetime.now()
six_months_ago = now - datetime.timedelta(days=180)
assoc.date = six_months_ago.strftime("%Y%m%d")
assoc.evidence.type = Curie.from_str("ECO:0000501")
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
## Warning if a year and a half year old.
eighteen_months_ago = now - datetime.timedelta(days=(30*18))
assoc.date = eighteen_months_ago.strftime("%Y%m%d")
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.WARNING
def test_go_rule29():
a = ["blah"] * 15
a[3] = ""
a[6] = "IEA"
a[8] = "P"
a[13] = "19901111" # Nov 11, 1990, more than a year old
assoc = gafparser.to_association(a).associations[0]
## Base test: old IEA.
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
## Pass if not IEA
assoc.evidence.type = "ECO:0000305" #Not IEA
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
## Pass if only a half year old.
now = datetime.datetime.now()
six_months_ago = now - datetime.timedelta(days=180)
assoc.date = six_months_ago.strftime("%Y%m%d")
assoc.evidence.type = "ECO:0000501"
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
## Warning if a year and a half year old.
eighteen_months_ago = now - datetime.timedelta(days=(30*18))
assoc.date = eighteen_months_ago.strftime("%Y%m%d")
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.WARNING
def test_go_rule29():
# Nov 11, 1990, more than a year old
assoc = make_annotation(evidence="IEA", date="19901111").associations[0]
## Base test: old IEA.
test_result = qc.GoRule29().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.ERROR
## Pass if not IEA
assoc.evidence.type = Curie.from_str(ic_eco) # Not IEA
test_result = qc.GoRule29().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.PASS
## Pass if only a half year old.
now = datetime.datetime.now()
six_months_ago = now - datetime.timedelta(days=180)
assoc.date = association.Date(six_months_ago.year, six_months_ago.month,
six_months_ago.day, "")
assoc.evidence.type = Curie.from_str(iea_eco)
test_result = qc.GoRule29().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.PASS
## Warning if a year and a half year old.
eighteen_months_ago = now - datetime.timedelta(days=(30 * 18))
assoc.date = association.Date(eighteen_months_ago.year,
eighteen_months_ago.month,
eighteen_months_ago.day, "")
test_result = qc.GoRule29().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.WARNING
## Confirm the test can parse a YYYY-MM-DD date format from GPAD 2.0
gpad_2_0_vals = assoc.to_gpad_2_0_tsv(
) # Cheat to shortcut DB and DB_Object_ID concatenation
gpad_2_0_vals[5] = iea_eco
gpad_2_0_vals[8] = "1990-11-11"
assoc = gpadparser.to_association(gpad_2_0_vals,
version="2.0").associations[0]
test_result = qc.GoRule29().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.ERROR
def test_go_rule29():
a = ["blah"] * 16
a[6] = "IEA"
a[13] = "19901111" # Nov 11, 1990, more than a year old
test_result = qc.GoRule29().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
a = ["blah"] * 16
a[6] = "FOO"
a[13] = "19901111"
test_result = qc.GoRule29().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
now = datetime.datetime.now()
six_months_ago = now - datetime.timedelta(days=180)
a = ["blah"] * 16
a[6] = "IEA"
a[13] = six_months_ago.strftime("%Y%m%d")
test_result = qc.GoRule29().test(a, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
def test_go_rule29():
a = ["blah"] * 15
a[3] = ""
a[6] = "IEA"
a[8] = "P"
a[13] = "19901111" # Nov 11, 1990, more than a year old
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.ERROR
assoc.evidence.type = "ECO:0000305" #Not IEA
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
now = datetime.datetime.now()
six_months_ago = now - datetime.timedelta(days=180)
assoc.date = six_months_ago.strftime("%Y%m%d")
assoc.evidence.type = "ECO:0000501"
test_result = qc.GoRule29().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS