def score_dataset(model, dataset, print_params=None, output_file=None):
"""Outputs the model scores for the dataset.
Args:
model: A :class:`opennmt.models.Model` instance.
dataset: A ``tf.data.Dataset`` instance outputting parallel features and
labels.
print_params: A dictionary of parameters passed to
:meth:`opennmt.models.Model.print_score`.
output_file: If set, outputs are saved in this file, otherwise they are
printed on the standard output.
"""
if output_file:
stream = open(output_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
write_fn = lambda batch: (model.print_score(
batch, params=print_params, stream=stream))
index_fn = lambda batch: batch.get("index")
ordered_writer = misc.OrderRestorer(index_fn, write_fn)
score_fn = tf.function(model.score, input_signature=dataset.element_spec)
for features, labels in dataset:
results = score_fn(features, labels)
results = tf.nest.map_structure(lambda t: t.numpy(), results)
for batch in misc.extract_batches(results):
ordered_writer.push(batch)
if output_file:
stream.close()
def score(self, features_file, predictions_file, checkpoint_path=None, output_file=None):
"""Scores existing predictions.
Args:
features_file: The input file.
predictions_file: The predictions file to score.
checkpoint_path: Path of a specific checkpoint to use. If ``None``,
the latest is used.
output_file: The file where the scores are saved. Otherwise, they will be
printed on the standard output.
"""
checkpoint, config = self._init_run()
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
model = checkpoint.model
score_config = config["score"]
dataset = model.examples_inputter.make_evaluation_dataset(
features_file,
predictions_file,
score_config["batch_size"],
prefetch_buffer_size=score_config.get("prefetch_buffer_size"))
if output_file:
stream = io.open(output_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
score_fn = tf.function(model.score, input_signature=dataset.element_spec)
for features, labels in dataset:
results = score_fn(features, labels)
results = tf.nest.map_structure(lambda t: t.numpy(), results)
for batch in misc.extract_batches(results):
model.print_score(batch, params=score_config, stream=stream)
if output_file:
stream.close()
def after_run(self, run_context, run_values): # pylint: disable=unused-argument
predictions, self._current_step = run_values.results
self._output_path = "{}.{}".format(self._output_file,
self._current_step)
with open(self._output_path, "a") as output_file:
for prediction in misc.extract_batches(predictions):
self._model.print_prediction(prediction, stream=output_file)
def __call__(self, step):
"""Runs the evaluator.
Args:
step: The current training step.
Returns:
A dictionary of evaluation metrics.
"""
tf.get_logger().info("Running evaluation for step %d", step)
output_file = None
output_path = None
if self._save_predictions:
output_path = os.path.join(self._eval_dir,
"predictions.txt.%d" % step)
output_file = tf.io.gfile.GFile(output_path, "w")
loss_num = 0
loss_den = 0
metrics = self._model.get_metrics()
for source, target in self._dataset:
loss, predictions = self._eval_fn(source, target)
if isinstance(loss, tuple):
loss_num += loss[0]
loss_den += loss[1]
else:
loss_num += loss
loss_den += 1
if metrics:
self._model.update_metrics(metrics, predictions, target)
if output_file is not None:
predictions = {
k: v.numpy()
for k, v in six.iteritems(predictions)
}
for prediction in misc.extract_batches(predictions):
self._model.print_prediction(prediction,
stream=output_file)
if loss_den == 0:
raise RuntimeError("No examples were evaluated")
loss = loss_num / loss_den
results = dict(loss=loss, perplexity=tf.math.exp(loss))
if metrics:
for name, metric in six.iteritems(metrics):
results[name] = metric.result()
if self._save_predictions:
tf.get_logger().info("Evaluation predictions saved to %s",
output_path)
output_file.close()
for scorer in self._scorers:
score = scorer(self._labels_file, output_path)
if isinstance(score, dict):
results.update(score)
else:
results[scorer.name] = score
return self._record_results(step, results)
def infer_list(self,
features_list: List[List[str]],
checkpoint_path: Optional[str] = None) -> List[List[str]]:
config = self._finalize_config()
model: Model = self._init_model(config)
checkpoint = Checkpoint.from_config(config, model)
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
infer_config = config["infer"]
dataset = make_inference_dataset(
model,
features_list,
infer_config["batch_size"],
length_bucket_width=infer_config["length_bucket_width"],
prefetch_buffer_size=infer_config.get("prefetch_buffer_size"),
)
infer_fn = tf.function(model.infer,
input_signature=(dataset.element_spec, ))
if not tf.config.functions_run_eagerly():
tf.get_logger().info(
"Tracing and optimizing the inference graph...")
infer_fn.get_concrete_function() # Trace the function now.
results: List[List[str]] = [[""]] * len(features_list[0])
for source in dataset:
predictions = infer_fn(source)
predictions = tf.nest.map_structure(lambda t: t.numpy(),
predictions)
for prediction in extract_batches(predictions):
index: int = prediction["index"]
num_hypotheses = len(prediction["log_probs"])
hypotheses: List[str] = []
for i in range(num_hypotheses):
if "tokens" in prediction:
target_length = prediction["length"][i]
tokens = prediction["tokens"][i][:target_length]
sentence = model.labels_inputter.tokenizer.detokenize(
tokens)
else:
sentence = prediction["text"][i]
hypotheses.append(sentence)
results[index] = hypotheses
return results
def infer_multiple(
self,
features_paths: List[Union[str, List[str]]],
predictions_paths: List[str],
checkpoint_path: Optional[str] = None,
) -> None:
config = self._finalize_config()
model: Model = self._init_model(config)
checkpoint = Checkpoint.from_config(config, model)
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
infer_config = config["infer"]
for features_path, predictions_path in zip(features_paths,
predictions_paths):
dataset = model.examples_inputter.make_inference_dataset(
features_path,
infer_config["batch_size"],
length_bucket_width=infer_config["length_bucket_width"],
prefetch_buffer_size=infer_config.get("prefetch_buffer_size"),
)
with open(predictions_path, encoding="utf-8", mode="w") as stream:
infer_fn = tf.function(
model.infer, input_signature=(dataset.element_spec, ))
if not tf.config.functions_run_eagerly():
tf.get_logger().info(
"Tracing and optimizing the inference graph...")
infer_fn.get_concrete_function() # Trace the function now.
# Inference might return out-of-order predictions. The OrderRestorer utility is
# used to write predictions in their original order.
ordered_writer = OrderRestorer(
lambda pred: pred.get("index"),
lambda pred: (model.print_prediction(
pred, params=infer_config, stream=stream)),
)
for source in dataset:
predictions = infer_fn(source)
predictions = tf.nest.map_structure(
lambda t: t.numpy(), predictions)
for prediction in extract_batches(predictions):
ordered_writer.push(prediction)
def score(self,
features_file,
predictions_file,
checkpoint_path=None,
output_file=None):
"""Scores existing predictions.
Args:
features_file: The input file.
predictions_file: The predictions file to score.
checkpoint_path: Path of a specific checkpoint to use. If ``None``,
the latest is used.
output_file: The file where the scores are saved. Otherwise, they will be
printed on the standard output.
"""
checkpoint, config = self._init_run()
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
model = checkpoint.model
score_config = config["score"]
dataset = model.examples_inputter.make_evaluation_dataset(
features_file,
predictions_file,
score_config["batch_size"],
prefetch_buffer_size=score_config.get("prefetch_buffer_size"))
@dataset_util.function_on_next(dataset, as_numpy=True)
def _score(next_fn):
features, labels = next_fn()
return model.score(features, labels)
if output_file:
stream = io.open(output_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
for results in _score(): # pylint: disable=no-value-for-parameter
for batch in misc.extract_batches(results):
model.print_score(batch, params=score_config, stream=stream)
if output_file:
stream.close()
def _testGenericModel(self,
model,
mode,
features_file,
labels_file=None,
data_config=None,
batch_size=16,
prediction_heads=None,
metrics=None,
params=None):
# Mainly test that the code does not throw.
if params is None:
params = model.auto_config()["params"]
if data_config is None:
data_config = {}
model.initialize(data_config, params=params)
model.create_variables()
# Build a dataset for mode.
if mode == tf.estimator.ModeKeys.PREDICT:
dataset = model.examples_inputter.make_inference_dataset(
features_file, batch_size)
elif mode == tf.estimator.ModeKeys.EVAL:
dataset = model.examples_inputter.make_evaluation_dataset(
features_file, labels_file, batch_size)
elif mode == tf.estimator.ModeKeys.TRAIN:
dataset = model.examples_inputter.make_training_dataset(
features_file, labels_file, batch_size)
# Forward first batch into the model.
data = iter(dataset).next()
if mode != tf.estimator.ModeKeys.PREDICT:
features, labels = data
else:
features, labels = data, None
training = mode == tf.estimator.ModeKeys.TRAIN
outputs, predictions = model(features, labels=labels, training=training)
if mode != tf.estimator.ModeKeys.PREDICT:
loss = model.compute_loss(outputs, labels, training=training)
if mode == tf.estimator.ModeKeys.EVAL:
# Check that returned evaluation metrics are expected.
eval_metrics = model.get_metrics()
if eval_metrics is not None:
model.update_metrics(eval_metrics, predictions, labels)
for metric in metrics:
self.assertIn(metric, eval_metrics)
try:
# Check that scores can be computed and printed without errors.
scores = model.score(features, labels)
first_score = tf.nest.map_structure(
lambda x: x.numpy(),
next(misc.extract_batches(scores)))
with open(os.devnull, "w") as devnull:
model.print_score(first_score, stream=devnull)
except NotImplementedError:
pass
else:
# Check that all prediction heads are returned.
self.assertIsInstance(predictions, dict)
if prediction_heads is not None:
for head in prediction_heads:
self.assertIn(head, predictions)
# Check that the prediction can be printed without errors.
first_prediction = tf.nest.map_structure(
lambda x: x.numpy(),
next(misc.extract_batches(predictions)))
with open(os.devnull, "w") as devnull:
model.print_prediction(first_prediction, stream=devnull)
def _analyze(
self,
inputs_list: List[lit_types.JsonDict]) -> List[lit_types.JsonDict]:
features_list: List[str] = list(
map(lambda input: encode_sp(self.src_spp, input["src_text"]),
inputs_list))
infer_config: dict = self.config["infer"]
dataset = make_inference_dataset(
self.model,
features_list,
infer_config["batch_size"],
length_bucket_width=infer_config["length_bucket_width"],
prefetch_buffer_size=infer_config.get("prefetch_buffer_size"),
)
if self._analyze_fn is None:
self._analyze_fn = tf.function(
self.model.analyze, input_signature=(dataset.element_spec, ))
if not tf.config.functions_run_eagerly():
tf.get_logger().info(
"Tracing and optimizing the analyze graph...")
self._analyze_fn.get_concrete_function(
) # Trace the function now.
results: List[lit_types.JsonDict] = [None] * len(features_list)
for features in dataset:
predictions = self._analyze_fn(features)
top_k_probs, top_k_ids = tf.nn.top_k(tf.nn.softmax(
predictions["logits"]),
k=10)
del predictions["logits"]
predictions["top_k_probs"] = top_k_probs
predictions["top_k_ids"] = top_k_ids
masks = tf.sequence_mask(features["length"],
maxlen=tf.shape(features["ids"])[1])
predictions["encoder_final_embedding"] = masked_token_mean(
predictions["encoder_outputs"], masks)
del predictions["encoder_outputs"]
predictions = tf.nest.map_structure(lambda t: t.numpy(),
predictions)
for prediction in extract_batches(predictions):
index: int = prediction["index"]
target_length = prediction["length"]
trg_tokens = prediction["tokens"][:target_length]
tok_trg_text = self.model.labels_inputter.tokenizer.detokenize(
trg_tokens)
trg_text = decode_sp(tok_trg_text)
attention = prediction["alignment"][:target_length]
probs = prediction["top_k_probs"]
ids = prediction["top_k_ids"]
pred_tokens = list(
self._convert_top_k(ids, probs, target_length))
encoder_final_embedding = prediction["encoder_final_embedding"]
ref_text = inputs_list[index]["ref_text"]
tok_ref_text = encode_sp(self.trg_spp, ref_text)
ter_score = sacrebleu.sentence_ter(tok_trg_text,
[tok_ref_text])
chrf_score = sacrebleu.sentence_chrf(trg_text, [ref_text],
order=3)
results[index] = {
"trg_tokens": [t.decode("utf-8") for t in trg_tokens],
"trg_text": trg_text,
"attention": np.expand_dims(attention, axis=0),
"src_tokens": features_list[index].split(),
"pred_tokens": pred_tokens,
"encoder_final_embedding": encoder_final_embedding,
"ter": ter_score.score,
"chrf3": chrf_score.score,
}
return results
def score(self, features_file, predictions_file, checkpoint_path=None):
"""Scores existing predictions.
Args:
features_file: The input file.
predictions_file: The predictions file to score.
checkpoint_path: Path of a specific checkpoint to use. If ``None``,
the latest is used.
Raises:
ValueError: if no checkpoint are found or if the model is not a sequence to
sequence model.
"""
if not hasattr(self._model, "target_inputter"):
raise ValueError("scoring only works for sequence to sequence models")
if checkpoint_path is None:
checkpoint_path = tf.train.latest_checkpoint(self._estimator.model_dir)
elif os.path.isdir(checkpoint_path):
checkpoint_path = tf.train.latest_checkpoint(checkpoint_path)
if checkpoint_path is None:
raise ValueError("could not find a trained model in %s" % self._estimator.model_dir)
if "score" not in self._config:
self._config["score"] = {}
batch_size = self._config["score"].get("batch_size", 64)
input_fn = self._model.input_fn(
tf.estimator.ModeKeys.EVAL,
batch_size,
self._config["data"],
features_file,
labels_file=predictions_file,
num_threads=self._config["score"].get("num_threads"),
prefetch_buffer_size=self._config["score"].get("prefetch_buffer_size"))
with tf.Graph().as_default() as g:
tf.train.create_global_step(g)
features, labels = input_fn()
with tf.variable_scope(self._model.name):
logits, _ = self._model(
features,
labels,
self._estimator.params,
tf.estimator.ModeKeys.EVAL)
cross_entropy = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=logits, labels=labels["ids_out"])
weights = tf.sequence_mask(labels["length"], dtype=cross_entropy.dtype)
masked_cross_entropy = cross_entropy * weights
scores = (tf.reduce_sum(masked_cross_entropy, axis=1) /
tf.cast(labels["length"], cross_entropy.dtype))
results = {
"score": scores,
"tokens": labels["tokens"],
"length": labels["length"] - 1 # For -1, see sequence_to_sequence.shift_target_sequence.
}
with tf.train.MonitoredSession(
session_creator=tf.train.ChiefSessionCreator(
checkpoint_filename_with_path=checkpoint_path,
config=self._estimator.config.session_config)) as sess:
while not sess.should_stop():
for batch in extract_batches(sess.run(results)):
tokens = batch["tokens"][:batch["length"]]
sentence = self._model.target_inputter.tokenizer.detokenize(tokens)
fmt = "%f ||| %s" % (batch["score"], sentence)
print_bytes(tf.compat.as_bytes(fmt))
def infer(self,
features_file,
predictions_file=None,
checkpoint_path=None,
log_time=False):
"""Runs inference.
Args:
features_file: The file(s) to infer from.
predictions_file: If set, predictions are saved in this file.
checkpoint_path: Path of a specific checkpoint to predict. If ``None``,
the latest is used.
log_time: If ``True``, several time metrics will be printed in the logs at
the end of the inference loop.
"""
checkpoint, config = self._init_run()
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
model = checkpoint.model
infer_config = config["infer"]
dataset = model.examples_inputter.make_inference_dataset(
features_file,
infer_config["batch_size"],
length_bucket_width=infer_config["length_bucket_width"],
prefetch_buffer_size=infer_config.get("prefetch_buffer_size"))
@dataset_util.function_on_next(dataset, as_numpy=True)
def _predict(next_fn):
source = next_fn()
return model.infer(source)
if predictions_file:
stream = io.open(predictions_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
ordered_writer = None
write_fn = lambda prediction: (model.print_prediction(
prediction, params=infer_config, stream=stream))
total_time = 0
total_tokens = 0
total_examples = 0
start_time = time.time()
for predictions in _predict(): # pylint: disable=no-value-for-parameter
end_time = time.time()
if log_time:
total_time += end_time - start_time
batch_size = next(six.itervalues(predictions)).shape[0]
total_examples += batch_size
length = predictions.get("length")
if length is not None:
if len(length.shape) == 2:
length = length[:, 0]
total_tokens += sum(length)
for prediction in misc.extract_batches(predictions):
if "index" in prediction:
if ordered_writer is None:
ordered_writer = misc.OrderRestorer(
index_fn=lambda prediction: prediction["index"],
callback_fn=write_fn)
ordered_writer.push(prediction)
else:
write_fn(prediction)
start_time = time.time()
if log_time:
tf.get_logger().info("Total prediction time (s): %f", total_time)
tf.get_logger().info("Average prediction time (s): %f",
total_time / total_examples)
if total_tokens > 0:
tf.get_logger().info("Tokens per second: %f",
total_tokens / total_time)
if predictions_file:
stream.close()
def infer(self,
features_file,
predictions_file=None,
checkpoint_path=None,
log_time=False):
"""Runs inference.
Args:
features_file: The file(s) to infer from.
predictions_file: If set, predictions are saved in this file.
checkpoint_path: Path of a specific checkpoint to predict. If ``None``,
the latest is used.
log_time: If ``True``, several time metrics will be printed in the logs at
the end of the inference loop.
"""
config = self._finalize_config()
model = self._init_model(config)
checkpoint = checkpoint_util.Checkpoint.from_config(config, model)
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
infer_config = config["infer"]
dataset = model.examples_inputter.make_inference_dataset(
features_file,
infer_config["batch_size"],
length_bucket_width=infer_config["length_bucket_width"],
prefetch_buffer_size=infer_config.get("prefetch_buffer_size"))
if predictions_file:
stream = open(predictions_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
infer_fn = tf.function(model.infer,
input_signature=(dataset.element_spec, ))
tf.get_logger().info("Tracing and optimizing the inference graph...")
infer_fn.get_concrete_function() # Trace the function now.
# Inference might return out-of-order predictions. The OrderRestorer utility is
# used to write predictions in their original order.
write_fn = lambda prediction: (model.print_prediction(
prediction, params=infer_config, stream=stream))
index_fn = lambda prediction: prediction.get("index")
ordered_writer = misc.OrderRestorer(index_fn, write_fn)
total_time = 0
total_tokens = 0
total_examples = 0
start_time = time.time()
# When the inference dataset is bucketized, it can happen that no output is
# written in a long time. To avoid confusion and give the impression that
# the process is stuck, we ensure that something is logged regularly.
max_time_without_output = 10
last_output_time = start_time
for source in dataset:
predictions = infer_fn(source)
predictions = tf.nest.map_structure(lambda t: t.numpy(),
predictions)
batch_time = time.time()
for prediction in misc.extract_batches(predictions):
written = ordered_writer.push(prediction)
if written:
last_output_time = batch_time
else:
time_without_output = batch_time - last_output_time
if time_without_output >= max_time_without_output:
tf.get_logger().info(
"%d predictions are buffered, but waiting for the prediction of "
"line %d to advance the output...",
ordered_writer.buffer_size,
ordered_writer.next_index + 1)
last_output_time = batch_time
if log_time:
batch_size = next(iter(predictions.values())).shape[0]
total_examples += batch_size
length = predictions.get("length")
if length is not None:
if len(length.shape) == 2:
length = length[:, 0]
total_tokens += sum(length)
if log_time:
end_time = time.time()
total_time = end_time - start_time
tf.get_logger().info("Total prediction time (s): %f", total_time)
tf.get_logger().info("Average prediction time (s): %f",
total_time / total_examples)
if total_tokens > 0:
tf.get_logger().info("Tokens per second: %f",
total_tokens / total_time)
if predictions_file:
stream.close()
def score(self, features_file, predictions_file, checkpoint_path=None):
"""Scores existing predictions.
Args:
features_file: The input file.
predictions_file: The predictions file to score.
checkpoint_path: Path of a specific checkpoint to use. If ``None``,
the latest is used.
Raises:
ValueError: if no checkpoint are found or if the model is not a sequence to
sequence model.
"""
if not hasattr(self._model, "target_inputter"):
raise ValueError("scoring only works for sequence to sequence models")
if checkpoint_path is None:
checkpoint_path = tf.train.latest_checkpoint(self._config["model_dir"])
elif tf.gfile.IsDirectory(checkpoint_path):
checkpoint_path = tf.train.latest_checkpoint(checkpoint_path)
if checkpoint_path is None:
raise ValueError("could not find a trained model in %s" % self._config["model_dir"])
input_fn = self._model.input_fn(
tf.estimator.ModeKeys.EVAL,
self._config["score"]["batch_size"],
self._config["data"],
features_file,
labels_file=predictions_file,
num_threads=self._config["score"].get("num_threads"),
prefetch_buffer_size=self._config["score"].get("prefetch_buffer_size"))
with tf.Graph().as_default() as g:
tf.train.create_global_step(g)
features, labels = input_fn()
labels["alignment"] = None # Add alignment key to force the model to return attention.
with tf.variable_scope(self._model.name):
outputs, _ = self._model(
features,
labels,
self._config["params"],
tf.estimator.ModeKeys.EVAL)
cross_entropy = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=outputs["logits"], labels=labels["ids_out"])
weights = tf.sequence_mask(labels["length"], dtype=cross_entropy.dtype)
masked_cross_entropy = cross_entropy * weights
scores = tf.reduce_sum(masked_cross_entropy, axis=1)
results = {
"attention": outputs["attention"],
"cross_entropy": cross_entropy,
"score": scores,
"tokens": labels["tokens"],
"length": labels["length"] - 1 # For -1, see sequence_to_sequence.shift_target_sequence.
}
with tf.train.MonitoredSession(
session_creator=tf.train.ChiefSessionCreator(
checkpoint_filename_with_path=checkpoint_path,
config=self._session_config)) as sess:
while not sess.should_stop():
for batch in misc.extract_batches(sess.run(results)):
tokens = batch["tokens"][:batch["length"]]
sentence = self._model.target_inputter.tokenizer.detokenize(tokens)
token_level_scores = None
if self._config["score"].get("with_token_level"):
token_level_scores = batch["cross_entropy"][:batch["length"]]
alignment_type = self._config["score"].get("with_alignments")
sentence = format_translation_output(
sentence,
score=batch["score"],
token_level_scores=token_level_scores,
attention=batch["attention"][:batch["length"]],
alignment_type=alignment_type)
misc.print_bytes(tf.compat.as_bytes(sentence))
def predict_dataset(model,
dataset,
print_params=None,
predictions_file=None,
log_time=False):
"""Outputs the model predictions for the dataset.
To run inference on strings directly, see
:meth:`opennmt.models.Model.serve_function`.
Args:
model: A :class:`opennmt.models.Model` instance.
dataset: A ``tf.data.Dataset`` instance outputting features.
print_params: A dictionary of parameters passed to
:meth:`opennmt.models.Model.print_prediction`.
predictions_file: If set, predictions are saved in this file, otherwise they
are printed on the standard output.
log_time: If ``True``, several time metrics will be printed in the logs at
the end of the inference loop.
"""
if predictions_file:
stream = open(predictions_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
infer_fn = tf.function(model.infer,
input_signature=(dataset.element_spec, ))
if not tf.config.functions_run_eagerly():
tf.get_logger().info("Tracing and optimizing the inference graph...")
infer_fn.get_concrete_function() # Trace the function now.
# Inference might return out-of-order predictions. The OrderRestorer utility is
# used to write predictions in their original order.
write_fn = lambda prediction: (model.print_prediction(
prediction, params=print_params, stream=stream))
index_fn = lambda prediction: prediction.get("index")
ordered_writer = misc.OrderRestorer(index_fn, write_fn)
total_time = 0
total_tokens = 0
total_examples = 0
start_time = time.time()
# When the inference dataset is bucketized, it can happen that no output is
# written in a long time. To avoid confusion and give the impression that
# the process is stuck, we ensure that something is logged regularly.
max_time_without_output = 10
last_output_time = start_time
for features in dataset:
predictions = infer_fn(features)
predictions = tf.nest.map_structure(lambda t: t.numpy(), predictions)
batch_time = time.time()
for prediction in misc.extract_batches(predictions):
written = ordered_writer.push(prediction)
if written:
last_output_time = batch_time
else:
time_without_output = batch_time - last_output_time
if time_without_output >= max_time_without_output:
tf.get_logger().info(
"%d predictions are buffered, but waiting for the prediction of "
"line %d to advance the output...",
ordered_writer.buffer_size,
ordered_writer.next_index + 1,
)
last_output_time = batch_time
if log_time:
batch_size = next(iter(predictions.values())).shape[0]
total_examples += batch_size
length = predictions.get("length")
if length is not None:
if len(length.shape) == 2:
length = length[:, 0]
total_tokens += sum(length)
if log_time:
end_time = time.time()
total_time = end_time - start_time
tf.get_logger().info("Total prediction time (s): %f", total_time)
tf.get_logger().info("Average prediction time (s): %f",
total_time / total_examples)
if total_tokens > 0:
tf.get_logger().info("Tokens per second: %f",
total_tokens / total_time)
if predictions_file:
stream.close()
def after_run(self, run_context, run_values): # pylint: disable=unused-argument
predictions, self._current_step = run_values.results
self._output_path = "{}.{}".format(self._output_file, self._current_step)
with open(self._output_path, "a") as output_file:
for prediction in misc.extract_batches(predictions):
self._model.print_prediction(prediction, stream=output_file)
def __call__(self, step):
"""Runs the evaluator.
Args:
step: The current training step.
Returns:
A dictionary of evaluation metrics.
"""
tf.get_logger().info("Running evaluation for step %d", step)
output_file = None
output_path = None
if self._save_predictions:
output_path = os.path.join(self._eval_dir,
"predictions.txt.%d" % step)
output_file = tf.io.gfile.GFile(output_path, "w")
params = {"n_best": 1}
write_fn = lambda prediction: (self._model.print_prediction(
prediction, params=params, stream=output_file))
index_fn = lambda prediction: prediction.get("index")
ordered_writer = misc.OrderRestorer(index_fn, write_fn)
loss_num = 0
loss_den = 0
metrics = self._model.get_metrics()
for source, target in self._dataset:
loss, predictions = self._eval_fn(source, target)
if isinstance(loss, tuple):
loss_num += loss[0]
loss_den += loss[1]
else:
loss_num += loss
loss_den += 1
if metrics:
self._model.update_metrics(metrics, predictions, target)
if output_file is not None:
predictions = {k: v.numpy() for k, v in predictions.items()}
for prediction in misc.extract_batches(predictions):
ordered_writer.push(prediction)
if loss_den == 0:
raise RuntimeError("No examples were evaluated")
loss = loss_num / loss_den
results = dict(loss=loss, perplexity=tf.math.exp(loss))
if metrics:
for name, metric in metrics.items():
results[name] = metric.result()
if self._save_predictions:
tf.get_logger().info("Evaluation predictions saved to %s",
output_path)
output_file.close()
for scorer in self._scorers:
score = scorer(self._labels_file, output_path)
if isinstance(score, dict):
results.update(score)
else:
results[scorer.name] = score
for name, value in results.items():
if isinstance(value, tf.Tensor):
results[name] = value.numpy()
self._record_results(step, results)
self._maybe_export(step, results)
self._maybe_garbage_collect_exports()
return results
def score(self,
features_file,
predictions_file,
checkpoint_path=None,
output_file=None):
"""Scores existing predictions.
Args:
features_file: The input file.
predictions_file: The predictions file to score.
checkpoint_path: Path of a specific checkpoint to use. If ``None``,
the latest is used.
output_file: The file where the scores are saved. Otherwise, they will be
printed on the standard output.
Raises:
ValueError: if no checkpoint are found or if the model is not a sequence to
sequence model.
"""
if not isinstance(self._model,
(models.LanguageModel, models.SequenceToSequence)):
raise ValueError(
"scoring only works for sequence to sequence or language models"
)
if checkpoint_path is None:
checkpoint_path = tf.train.latest_checkpoint(
self._config["model_dir"])
elif tf.gfile.IsDirectory(checkpoint_path):
checkpoint_path = tf.train.latest_checkpoint(checkpoint_path)
if checkpoint_path is None:
raise ValueError("could not find a trained model in %s" %
self._config["model_dir"])
model = copy.deepcopy(self._model)
with tf.Graph().as_default():
dataset = model.examples_inputter.make_evaluation_dataset(
features_file,
predictions_file,
self._config["score"]["batch_size"],
num_threads=self._config["score"].get("num_threads"),
prefetch_buffer_size=self._config["score"].get(
"prefetch_buffer_size"))
iterator = dataset.make_initializable_iterator()
features, labels = iterator.get_next()
labels[
"alignment"] = None # Add alignment key to force the model to return attention.
outputs, _ = model(features, labels, self._config["params"],
tf.estimator.ModeKeys.EVAL)
cross_entropy = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=outputs["logits"], labels=labels["ids_out"])
weights = tf.sequence_mask(labels["length"],
dtype=cross_entropy.dtype)
masked_cross_entropy = cross_entropy * weights
scores = (tf.reduce_sum(masked_cross_entropy, axis=1) /
tf.cast(labels["length"], cross_entropy.dtype))
results = {
"cross_entropy": cross_entropy,
"score": scores,
"tokens": labels["tokens"],
"length": labels["length"] - 1 # -1 for the special token.
}
if "attention" in outputs:
results["attention"] = outputs["attention"]
if output_file:
stream = io.open(output_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
output_tokenizer = (self._model.labels_inputter.tokenizer
if not self._model.unsupervised else
self._model.features_inputter.tokenizer)
with tf.train.MonitoredSession(
session_creator=tf.train.ChiefSessionCreator(
checkpoint_filename_with_path=checkpoint_path,
config=self._session_config)) as sess:
sess.run(iterator.initializer)
while not sess.should_stop():
for batch in misc.extract_batches(sess.run(results)):
tokens = batch["tokens"][:batch["length"]]
sentence = output_tokenizer.detokenize(tokens)
token_level_scores = None
attention = None
if self._config["score"].get("with_token_level"):
token_level_scores = batch[
"cross_entropy"][:batch["length"]]
if "attention" in batch:
attention = batch["attention"][:batch["length"]]
alignment_type = self._config["score"].get(
"with_alignments")
sentence = format_translation_output(
sentence,
score=batch["score"],
token_level_scores=token_level_scores,
attention=attention,
alignment_type=alignment_type)
misc.print_bytes(tf.compat.as_bytes(sentence),
stream=stream)
if output_file:
stream.close()
def infer(self,
features_file,
predictions_file=None,
checkpoint_path=None,
log_time=False):
"""Runs inference.
Args:
features_file: The file(s) to infer from.
predictions_file: If set, predictions are saved in this file.
checkpoint_path: Path of a specific checkpoint to predict. If ``None``,
the latest is used.
log_time: If ``True``, several time metrics will be printed in the logs at
the end of the inference loop.
"""
checkpoint, config = self._init_run()
checkpoint.restore(checkpoint_path=checkpoint_path, weights_only=True)
model = checkpoint.model
infer_config = config["infer"]
dataset = model.examples_inputter.make_inference_dataset(
features_file,
infer_config["batch_size"],
length_bucket_width=infer_config["length_bucket_width"],
prefetch_buffer_size=infer_config.get("prefetch_buffer_size"))
if predictions_file:
stream = open(predictions_file, encoding="utf-8", mode="w")
else:
stream = sys.stdout
infer_fn = tf.function(model.infer,
input_signature=(dataset.element_spec, ))
infer_fn.get_concrete_function() # Trace the function now.
# Inference might return out-of-order predictions. The OrderRestorer utility is
# used to write predictions in their original order.
write_fn = lambda prediction: (model.print_prediction(
prediction, params=infer_config, stream=stream))
index_fn = lambda prediction: prediction.get("index")
ordered_writer = misc.OrderRestorer(index_fn, write_fn)
total_time = 0
total_tokens = 0
total_examples = 0
start_time = time.time()
for source in dataset:
predictions = infer_fn(source)
predictions = tf.nest.map_structure(lambda t: t.numpy(),
predictions)
for prediction in misc.extract_batches(predictions):
ordered_writer.push(prediction)
if log_time:
batch_size = next(iter(predictions.values())).shape[0]
total_examples += batch_size
length = predictions.get("length")
if length is not None:
if len(length.shape) == 2:
length = length[:, 0]
total_tokens += sum(length)
if log_time:
end_time = time.time()
total_time = end_time - start_time
tf.get_logger().info("Total prediction time (s): %f", total_time)
tf.get_logger().info("Average prediction time (s): %f",
total_time / total_examples)
if total_tokens > 0:
tf.get_logger().info("Tokens per second: %f",
total_tokens / total_time)
if predictions_file:
stream.close()