def on_gene_sets_download(self, result):
# make sure this happens in the main thread.
# Qt insists that widgets be created within the GUI(main) thread.
assert threading.current_thread() == threading.main_thread()
self.progress_bar.finish()
self.setStatusMessage('')
tax_id, sets = result
self.set_hierarchy_model(self.hierarchy_widget,
*hierarchy_tree(tax_id, sets))
self.organism_select_combobox.setEnabled(True) # re-enable combobox
self.update_info_box()
self.mapped_genes = self.gene_matcher.map_input_to_ncbi()
self.workers = defaultdict(list)
self.progress_bar_iterations = dict()
for selected_hierarchy in [*self.get_hierarchies()]:
gene_sets = geneset.load_gene_sets(selected_hierarchy)
worker = Worker(get_collections,
gene_sets,
self.mapped_genes,
progress_callback=True,
partial_result=True)
worker.signals.error.connect(self.handle_error)
worker.signals.finished.connect(self.handle_worker_finished)
worker.signals.progress.connect(self._progress_advance)
worker.signals.partial_result.connect(self.populate_data_model)
worker.setAutoDelete(False)
self.workers[selected_hierarchy] = worker
self.progress_bar_iterations[selected_hierarchy] = len(gene_sets)
def load_gene_sets(self, tax_id):
# type: (str) -> None
self.gs_object = GeneSets()
self.clear()
gene_sets = list_all(organism=tax_id)
self.set_hierarchy_model(self.hierarchy_tree_widget,
self.hierarchy_tree(gene_sets))
for gene_set in gene_sets:
g_sets = load_gene_sets(gene_set, tax_id)
self.gs_object.update([g_set for g_set in g_sets])
self.set_selected_hierarchies()
def on_gene_sets_download(self, result):
# make sure this happens in the main thread.
# Qt insists that widgets be created within the GUI(main) thread.
assert threading.current_thread() == threading.main_thread()
self.setStatusMessage('')
if result:
for res in result:
g_sets = geneset.load_gene_sets(res, self.tax_id)
self.gene_sets_obj.update([g_set for g_set in g_sets])
# add custom sets if there are any
self.invalidate()
self.update_info_box()