def test_run_experiment_twice(self):
# create experiment
form = self.form.get_form()
form.request.form.update({
'form.buttons.save': 'Create and start',
})
# update form with updated request
form.update()
# start experiment
jt = IJobTracker(self.experiments['my-experiment'])
self.assertEqual(jt.state, u'QUEUED')
#error
state = jt.start_job(form.request)
self.assertEqual(state[0], 'error')
# finish current job
transaction.commit()
self.assertEqual(jt.state, u'COMPLETED')
# TODO: after commit tasks cause site to disappear and the
# following code will fail, bceause without site we can't find
# a catalog without whchi we can't finde the toolkit by uuid
jt.start_job(form.request)
# FIXME: why is this running? (would a transaction abort work as well? to refresh my object?)
self.assertEqual(jt.state, u'RUNNING')
transaction.commit()
self.assertEqual(jt.state, u'COMPLETED')
def __call__(self):
# TODO: could also just submit current context (the experiment)
# with all infos accessible from it
jt = IJobTracker(self.context)
msgtype, msg = jt.start_job(self.request)
if msgtype is not None:
IStatusMessage(self.request).add(msg, type=msgtype)
self.request.response.redirect(self.context.absolute_url())
def __call__(self):
# TODO: could also just submit current context (the experiment)
# with all infos accessible from it
jt = IJobTracker(self.context)
msgtype, msg = jt.start_job(self.request)
if msgtype is not None:
IStatusMessage(self.request).add(msg, type=msgtype)
self.request.response.redirect(self.context.absolute_url())
def pullOccurrenceFromALA(self, lsid, taxon, common=None):
# TODO: check permisions?
# 1. create new dataset with taxon, lsid and common name set
portal = getToolByName(self.context, 'portal_url').getPortalObject()
dscontainer = portal[defaults.DATASETS_FOLDER_ID][defaults.DATASETS_SPECIES_FOLDER_ID]
title = [taxon]
if common:
title.append(u"({})".format(common))
# TODO: check whether title will be updated in transmog import?
# set title now to "Whatever (import pending)"?
# TODO: make sure we get a better content id that dataset-x
ds = createContentInContainer(dscontainer,
'org.bccvl.content.dataset',
title=u' '.join(title))
# TODO: add number of occurences to description
ds.description = u' '.join(title) + u' imported from ALA'
md = IBCCVLMetadata(ds)
# TODO: provenance ... import url?
# FIXME: verify input parameters before adding to graph
md['genre'] = 'DataGenreSpeciesOccurrence'
md['species'] = {
'scientificName': taxon,
'taxonID': lsid,
}
if common:
md['species']['vernacularName'] = common
IStatusMessage(self.request).add('New Dataset created',
type='info')
# 2. create and push alaimport job for dataset
# TODO: make this named adapter
jt = IJobTracker(ds)
status, message = jt.start_job()
# reindex object to make sure everything is up to date
ds.reindexObject()
# Job submission state notifier
IStatusMessage(self.request).add(message, type=status)
return (status, message)
def handleAdd(self, action):
data, errors = self.extractData()
self.validateAction(data)
if errors:
self.status = self.formErrorsMessage
return
# TODO: this is prob. a bug in base form, because createAndAdd
# does not return the wrapped object.
obj = self.createAndAdd(data)
if obj is None:
# TODO: this is probably an error here?
# object creation/add failed for some reason
return
# get wrapped instance fo new object (see above)
obj = self.context[obj.id]
# mark only as finished if we get the new object
self._finishedAdd = True
IStatusMessage(self.request).addStatusMessage(_(u"Item created"),
"info")
# auto start job here
jt = IJobTracker(obj)
msgtype, msg = jt.start_job(self.request)
if msgtype is not None:
IStatusMessage(self.request).add(msg, type=msgtype)
