""" Contains paths to the various files and directories inside solarpy. """ __author__ = "smathias" import os from os.path import join as pj from os.path import dirname as pd # local paths PACKAGE_DIR = os.path.abspath(pd(pd(__file__))) DATA_DIR = pj(PACKAGE_DIR, "data") SUPPORT_DIR = pj(PACKAGE_DIR, "support_files") MIBD_DIR = pj(SUPPORT_DIR, "mibd") OLD_PED_DIR = pj(SUPPORT_DIR, "old_ped_files") NEW_PED_DIR = pj(SUPPORT_DIR, "new_ped_files") JOBS_DIR = pj(PACKAGE_DIR, "jobs") RESULTS_DIR = pj(PACKAGE_DIR, "results") OUTPUTS_DIR = pj(PACKAGE_DIR, "outputs") FIGURES_DIR = pj(PACKAGE_DIR, "figures") DISTRIBUTIONS_DIR = pj(FIGURES_DIR, "distributions") SURF_DIR = pj(DATA_DIR, "surfaces") # paths in Texas MIBD_DIR_TX = "/data/SAFS/Linkage/Sep2011/MIBD" if __name__ == "__main__":
"""
Contains paths to the various files and directories inside the solarpy package.
"""
__author__ = 'smathias'
import os
from os.path import join as pj
from os.path import dirname as pd
# local paths
root_dir = os.path.abspath(pd(pd(pd(__file__))))
data_dir = pj(root_dir, 'data')
pheno_dir = pj(data_dir, 'phenotypes')
merv_dir = pj(data_dir, 'merv')
gwa_dir = pj(data_dir, 'gwa')
mibd_dir = pj(data_dir, 'mibd')
solarpy_dir = pj(root_dir, 'solarpy')
analysis_dir = pj(root_dir, 'analysis')
newest_ped_dir = pj(data_dir, 'newest_ped_files')
oldest_ped_dir = pj(data_dir, 'oldest_ped_files')
linkage_ped_dir = pj(data_dir, 'linkage_ped_files')
solar_path = pj(pd(root_dir), 'solar')
cormat_dir = pj(data_dir, 'correlation_matrices')
if __name__ == '__main__':
pass
from os import makedirs
from os.path import exists
from os.path import dirname as pd
from os.path import join as pj
root_dir = pd(__file__)
data_dir = pj(root_dir, 'data')
csv_dir = pj(data_dir, 'csvs')
new_csv_dir = pj(data_dir, 'new_csvs')
demo_dir = pj(data_dir, 'demographics')
mcmc_dir = pj(root_dir, 'mcmc')
analysis_dir = pj(root_dir, 'analysis')
def get_model_dir(depends_on, includes):
"""Returns the directory for a model."""
_depends_on = ','.join(depends_on)
if len(includes) == 0:
_includes = 'none'
else:
_includes = ','.join(includes)
model_dir = pj('mcmc', _depends_on, _includes)
if not exists(model_dir):