def snipTree (folderPathRaw,stopRaw=''):
import os, sys, time
from osWalk import walktree
folderPath=os.path.abspath(folderPathRaw)
stop=os.path.abspath(stopRaw)
if os.path.lexists(folderPath):
if (not os.path.lexists(stop)):
print "%s does not exist" %(folderPathRaw)
sys.exit()
if stop!='' and (not stop in folderPath):
print "%s not match %s" %(stop, folderPathRaw)
sys.exit()
signal=0
aa=0
while signal==0:
folderContent=walktree(top=folderPath)
i=0
for (basepath, children) in folderContent:
for child in children:
DirFile= os.path.join(basepath, child)
if ('.DS_Store' in DirFile) or ('/.imap/' in DirFile):
aa=1
else:
i=i+1
if i==0:
rmfolder='rm -R %s' %(folderPath)
os.system(rmfolder)
folderPath=os.path.dirname(folderPath)
if folderPath==stop:
signal=1
else:
signal=1
def commonPublic(dirFs):
from osWalk import walktree
import os, sys,pwd,stat
if os.path.exists(dirFs):
for (basepath, children) in walktree(dirFs,False):
for child in children:
DirFile=os.path.join(basepath, child)
folderOwner=pwd.getpwuid(os.lstat(DirFile)[4])[0]
if os.environ["USER"]==folderOwner and oct(os.lstat(DirFile)[stat.ST_MODE] & 0777)[1:3]!=['7','7','7']:
unlock='chmod ugo=rwx \"%s\"' %(DirFile)
if not os.path.islink(DirFile):
os.system(unlock)
def wipeProj(projPathAtRemote):
import os, sys, pwd, stat
from xml.dom import minidom
from osWalk import walktree
from userName import userName
from UnjoinMail import UnjoinMailSub
from pathInfo import pathInfo_j
from unjoinProj import unjoinProj
from snipTree import snipTree
projPathInfo = pathInfo_j(projPathAtRemote)
# pathInfo: pathOutput=(pathAbs,projName,projNameA,projNameP,projNameAP,pathPrefix,secId,pidType)
# 0 1 2 3 4 5 6 7
#
secId = projPathInfo[6]
pidType = projPathInfo[7]
projName = projPathInfo[1]
# give project path (with proj name), relative to pathPrefix as in pathInfo.py
projNameP = projPathInfo[3]
pathPrefix = projPathInfo[5]
if pidType == "private":
pid = 1
elif pidType == "shared":
pid = 3
else:
sys.exit("Wrong project type, contact support")
if secId == "BIOSTAT":
secIdN = 1
elif secId == "BIOINFO":
secIdN = 2
else:
sys.exit("Wrong section ID, contact support")
print "\nYou are going to permanently wipe out a project with the following parameters:"
print " Section : %s" % (projPathInfo[6])
print " Project Type : %s" % (projPathInfo[7])
print " Local Project Path : %s" % (projPathInfo[9])
print "Remote Project Path : %s\n" % (projPathInfo[0])
pathVerify = raw_input("Is the above information correct [y] (y/n) ? ")
pathVerify = pathVerify.upper()
while not (pathVerify in ["", "Y", "N", "YES", "NO"]):
print 'Please answer with "y" or "n" '
pathVerify = raw_input("Are these correct [y] (y/n)? ")
pathVerify = pathVerify.upper()
if pathVerify in ["N", "NO"]:
sys.exit("\n")
# #########################################
projPathAtRemote = projPathInfo[0] # os.path.abspath(projPathAtRemote)
ProjToBeUnjoind = projPathInfo[1] # projPathAtRemote.split('/')[-1]
# name of the project to be unjoined
# #########################################
while not os.path.exists(projPathAtRemote):
print "\nThere is no project as your input ('%s'). \nPlease verify the project name and directory path.\n" % (
projPathAtRemote
)
continueDel = raw_input("Do you wan to specify another project to wipe out? y/n: ")
print "\n"
if continueDel.strip().upper() == "N":
sys.exit("Good-bye.\n")
break
elif continueDel.strip().upper() != "Y":
print "Please answer with y or n"
else:
projPathAtRemote = raw_input("Please input the name of the project which you want to wipe out: ")
# #########################################
if pid in [1, 2]:
projPathAtLocal = os.environ["HOME"] + "/MyProjects_" + secId + "/private" + "/" + ProjToBeUnjoind
else:
projPathAtLocal = os.environ["HOME"] + "/MyProjects_" + secId + "/shared" + "/" + ProjToBeUnjoind
homePath = os.environ["HOME"]
os.chdir(os.environ["HOME"])
# Initialize as in start.project #####
startprojectXML = r"//genomics/lib/start.project/start.project.xml"
BIOINFOprojRootPath = r"//genomics/Projects"
BIOSTATprojRootPath = r"/proj/BIOSTAT/Projects"
USERprojRootPathPre = r"MyProjects"
SHAREDPATH = r"shared"
PRIVATEPATH = r"private"
continueAsk = 0
while continueAsk == 0:
projExist = "No"
if not (ProjToBeUnjoind == ""):
cask = 0
while cask == 0:
string1 = "The project contents of '%s' will be purged. Are you sure ?! y/n: " % (ProjToBeUnjoind)
AreYouSure = raw_input(string1)
if AreYouSure.strip().upper() == "Y":
print "\nDestorying Project. Please wait... \n ......\n"
continueAsk = 1
break
elif AreYouSure.strip().upper() == "N":
# print "Good-bye"
continueAsk = 1
print "\n Good-bye.\n"
sys.exit()
# break
else:
print "Please answer with y or n"
else:
print "\nThere is no project as your input. \nPlease verify the directory path and the project name to be wiped out.\n" # (\'%s\')%(ProjToBeUnjoindRawInput)
while True:
continueDel = raw_input("Do you wan to specify another project to wipe out? y/n: ")
print "\n"
if continueDel.strip().upper() == "Y":
break
elif continueDel.strip().upper() == "N":
print "Good-bye"
continueAsk = 1
sys.exit()
break
else:
print "Please answer with y or n"
memberList = []
if os.path.exists(projPathAtRemote):
for (basepath, children) in walktree(projPathAtRemote, False):
for child in children:
DirFile = os.path.join(basepath, child)
if os.path.islink(DirFile) and (not os.path.exists(os.path.realpath(DirFile))): # dead link
DirFile = os.path.dirname(os.path.join(basepath, child))
folderOwner = pwd.getpwuid(os.stat(DirFile)[4])[0]
if os.environ["USER"] != folderOwner:
GidOfjoinProjFolder = os.stat(projPathAtRemote)[5]
if GidOfjoinProjFolder in os.getgroups():
if (not (oct(os.stat(DirFile)[stat.ST_MODE] & 0777)[2] in ["7", "6", "2", "3"])) or (
not (oct(os.stat(DirFile)[stat.ST_MODE] & 0777)[3] in ["7", "6", "2", "3"])
):
if not (folderOwner in memberList):
print DirFile
memberList.append(folderOwner)
else:
print "%s, which is belong to %s, is not allowed to be deleted." % (
DirFile,
userName(folderOwner)[1] + userName(folderOwner)[2],
)
sys.exit()
elif (oct(os.stat(DirFile)[stat.ST_MODE] & 0777)[2] != "7") or (
oct(os.stat(DirFile)[stat.ST_MODE] & 0777)[3] != "7"
):
unlock = 'chmod ugo=rwx "%s"' % (DirFile)
os.system(unlock)
if len(memberList) >= 1:
members = ""
for member in memberList:
memberName = userName(member)[1] + " " + userName(member)[2]
members = memberName + ", " + members
members = members.rstrip(", ")
print 'The project can not be wiped out at this time.\nThere are still members in this project.\nPlease ask "%s" to unjoin project first.' % (
members
)
sys.exit()
# shared project delete
if 3 > 2:
if os.path.islink(projPathAtLocal):
os.remove(projPathAtLocal)
if os.path.exists(homePath + "/.mailboxlist"):
UnjoinMailSub(ProjToBeUnjoind, pid, secIdN, ".mailboxlist")
if os.path.exists(homePath + "/.subscriptions"):
UnjoinMailSub(ProjToBeUnjoind, pid, secIdN, ".subscriptions")
if secId == "BIOINFO":
projRoot0 = "//genomics"
elif secId == "BIOSTAT":
projRoot0 = "/proj/BIOSTAT"
if pid == 3:
pathToXML = projPathAtRemote + "/.common/" + ".proj_info.xml"
elif pid in [1, 2]:
pathToXML = projPathAtRemote + "/.proj_info.xml"
if os.path.exists(pathToXML):
xmldoc = minidom.parse(pathToXML)
cNodes = xmldoc.childNodes
projNum = cNodes[0].getElementsByTagName("projNum")
projNameP = projPathInfo[3]
projInfoFileName = os.path.basename((projNum)[0].firstChild.nodeValue.strip())
relativePathtoXML = projPathInfo[3]
XMLLink = os.path.join(
projRoot0, "Projects/.projInfo", (os.path.join(projNameP, projInfoFileName)).replace("/", "=>")
)
try:
tempstring = 'rm "%s"' % (XMLLink)
os.remove(XMLLink)
except:
aa = 0
if pid == 3:
PublicFolder = projRoot0 + "/Public/.projects/" + ProjToBeUnjoind
if os.path.exists(PublicFolder):
removePublic = 'rm -R -f "%s"' % (PublicFolder)
os.system(removePublic)
localMail = projPathAtLocal.replace(os.environ["HOME"], os.environ["HOME"] + "/mail")
if os.path.exists(localMail):
removeMail = 'rm -R -f "%s"' % (localMail)
os.system(removeMail)
projPathAtRemoteAP = projPathInfo[4]
projNameA = projPathInfo[2]
moveMain = 'rm -R -f "%s"' % (projPathAtRemote)
os.system(moveMain)
projPathAtLocal = projPathInfo[9]
localPathPrefix = projPathInfo[8]
localMail = projPathAtLocal.replace(os.environ["HOME"], os.path.join(os.environ["HOME"], "mail"), 1)
if pidType == "private":
snipTree(folderPathRaw=os.path.dirname(projPathAtLocal), stopRaw=localPathPrefix) # local main
snipTree(folderPathRaw=os.path.dirname(localMail), stopRaw=os.path.join(os.environ["HOME"], "mail"))
snipTree(folderPathRaw=projPathAtRemoteAP, stopRaw=pathPrefix)
else:
snipTree(folderPathRaw=os.path.dirname(projPathAtLocal), stopRaw=localPathPrefix) # local main
snipTree(folderPathRaw=os.path.dirname(localMail), stopRaw=os.path.join(os.environ["HOME"], "mail"))
snipTree(folderPathRaw=projPathAtRemoteAP, stopRaw=pathPrefix)
remotePublicRoot = pathPrefix.replace("/Projects/shared", "/Public/.projects", 1)
remotePublic = projPathAtRemoteAP.replace(pathPrefix, remotePublicRoot, 1)
snipTree(folderPathRaw=remotePublic, stopRaw=remotePublicRoot)
print "Wipeout operation is completed. Good-bye.\n"
def delProj(projPathAtRemote):
import os,sys,pwd,stat
from xml.dom import minidom
from osWalk import walktree
from userName import userName
from UnjoinMail import UnjoinMailSub
from pathInfo import pathInfo_d,pathInfo_ks
from unjoinProj import unjoinProj
from snipTree import snipTree
##################################
projPathInfo=pathInfo_d(projPathAtRemote)
# pathInfo: pathOutput=(pathAbs,projName,projNameA,projNameP,projNameAP,pathPrefix,secId,pidType)
# 0 1 2 3 4 5 6 7
# -2 -1
secId=projPathInfo[6]
pidType=projPathInfo[7]
projName=projPathInfo[1]
projNameP=projPathInfo[3]
pathPrefix=projPathInfo[5]
if pidType=='private':
pid=1
elif pidType=='shared':
pid=3
else: sys.exit("Wrong project type, contact support")
if secId=='BIOSTAT':
secIdN=1
elif secId=='BIOINFO':
secIdN=2
else: sys.exit("Wrong section ID, contact support")
if projPathInfo[7]=='shared':
print "\nYou are going to delete a project with the following parameters:"
print " Section : %s" %(projPathInfo[6])
print " Project Type : %s" %(projPathInfo[7])
print " Local Project Path : %s" %(projPathInfo[9])
print "Remote Project Path : %s\n" %(projPathInfo[0])
pathVerify=raw_input("Is the above information correct [y] (y/n) ? " )
pathVerify=pathVerify.upper()
#print pathVerify
while not (pathVerify in ["","Y","N","YES","NO"]):
print "Please answer with \"y\" or \"n\" "
pathVerify=raw_input("Are these correct [y] (y/n)? " )
pathVerify=pathVerify.upper()
if pathVerify in ["N","NO"]:
sys.exit("Please change to your home directory and rerun the start.project.")
###########################################
projPathAtRemote=projPathInfo[0]
ProjToBeUnjoind=projPathInfo[1]
###########################################
while not os.path.exists(projPathAtRemote):
print "\nThere is no project as your input (\'%s\'). \nPlease verify the project name and directory path.\n" %(projPathAtRemote)
continueDel=raw_input("Do you wan to specify another project to delete? y/n: ")
print "\n"
if (continueDel.strip().upper() == 'N'):
sys.exit("Good-bye.\n")
break
elif (continueDel.strip().upper() != 'Y'):
print "Please answer with y or n"
else:
projPathAtRemote = raw_input("Please input the name of the project which you want to delete: ")
############################################
# get local proj path ###
if pid in [1,2]:
projPathAtLocal=os.environ['HOME']+'/MyProjects_'+secId+'/private'+'/'+ProjToBeUnjoind
else:
projPathAtLocal=os.environ['HOME']+'/MyProjects_'+secId+'/shared'+'/'+ProjToBeUnjoind
homePath=os.environ['HOME']
os.chdir(os.environ['HOME'])
# Initialize as in the start.project #######
startprojectXML = r'//genomics/lib/start.project/start.project.xml'
BIOINFOprojRootPath = r'//genomics/Projects'
BIOSTATprojRootPath = r'/proj/BIOSTAT/Projects'
USERprojRootPathPre = r'MyProjects'
SHAREDPATH = r'shared'
PRIVATEPATH = r'private'
###############
if pidType == 'private':
try:
unjoinProj(projPathAtRemote=projPathAtRemote,pattern='non-verbose',pd='Tt')
except:
sys.exit("Errors. Pleasee contact support.")
print "Deleting.... Please wait.\n .... "
sys.exit("Delete completed. Good bye.")
################
################
continueAsk=0
while continueAsk==0:
projExist="No"
if ( not(ProjToBeUnjoind=='')) :
cask=0
while cask==0:
string1='Are you sure to delete the whole project \'%s\' y/n ?: ' %(ProjToBeUnjoind)
AreYouSure=raw_input(string1)
if (AreYouSure.strip().upper() == 'Y'):
print "\nDeleting. Please wait... \n ......\n"
continueAsk=1
break
elif (AreYouSure.strip().upper() == 'N'):
continueAsk=1
print '\n Good-bye.\n'
sys.exit()
else:
print "Please answer with y or n"
else:
print "\nThere is no project as your input. \nPlease verify the directory path and the project name to be deleted.\n" #(\'%s\')%(ProjToBeUnjoindRawInput)
while True:
continueDel=raw_input("Do you wan to specify another project to delete? y/n: ")
print "\n"
if (continueDel.strip().upper() == 'Y'):
break
elif (continueDel.strip().upper() == 'N'):
print "Good-bye"
continueAsk=1
sys.exit()
break
else:
print "Please answer with y or n"
#############################################
DirFileInfo=[]
memberList=[]
if os.path.exists(projPathAtRemote):
for (basepath, children) in walktree(projPathAtRemote,False):
for child in children:
DirFile=os.path.join(basepath, child)
folderOwner=pwd.getpwuid(os.stat(DirFile)[4])[0] #lstat ==>stat
if os.environ["USER"]!=folderOwner:
GidOfjoinProjFolder=os.stat(projPathAtRemote)[5]
if (GidOfjoinProjFolder in os.getgroups()):
if (not (oct(os.stat(DirFile)[stat.ST_MODE] & 0777)[2] in ['7','6','3','2'])) and (not (oct(os.stat(DirFile)[stat.ST_MODE] & 0777)[3] in ['7','6','3','2'])):
if not(folderOwner in memberList):
#print DirFile
DirFileInfo.append(DirFile)
memberList.append(folderOwner)
else:
print "%s, which is belong to %s, is not allowed to be deleted." %(DirFile, userName(folderOwner)[1]+userName(folderOwner)[2])
sys.exit()
elif (oct(os.lstat(DirFile)[stat.ST_MODE] & 0777)[1:3]!=['7','7','7']):
unlock='chmod ugo=rwx \"%s\"' %(DirFile)
os.system(unlock)
if os.environ["USER"]==pwd.getpwuid(os.stat(projPathAtRemote)[4])[0]:
if (oct(os.lstat(projPathAtRemote)[stat.ST_MODE] & 0777)[1:3]!=['7','7','7']):
unlock='chmod ugo=rwx \"%s\"' %(projPathAtRemote)
os.system(unlock)
if len(memberList)>=1:
members=''
for member in memberList:
memberName=userName(member)[1]+' '+userName(member)[2]
members=memberName+', '+members
members=members.rstrip(', ')
print "The project can not be deleted at this time.\nThere are still members in this project.\nPlease ask \"%s\" to unjoin project first." %(members)
sys.exit()
# shared project delete
if 3>2:
if os.path.islink(projPathAtLocal):
os.remove(projPathAtLocal)
if os.path.exists(homePath+'/.mailboxlist'):
UnjoinMailSub(ProjToBeUnjoind,pid,secIdN,'.mailboxlist')
if os.path.exists(homePath+'/.subscriptions'):
UnjoinMailSub(ProjToBeUnjoind,pid,secIdN,'.subscriptions')
if secId=='BIOINFO':
projRoot0='//genomics'
elif secId=='BIOSTAT':
projRoot0='/proj/BIOSTAT'
pathToXML=projPathAtRemote+'/.common/'+'.proj_info.xml'
if os.path.exists(pathToXML):
xmldoc=minidom.parse(pathToXML)
cNodes=xmldoc.childNodes
projNum=cNodes[0].getElementsByTagName("projNum")
projNameP=projPathInfo[3]
projInfoFileName=os.path.basename((projNum)[0].firstChild.nodeValue.strip())
relativePathtoXML=projPathInfo[3]
XMLLink=os.path.join(projRoot0,'Projects/.projInfo',projInfoFileName.replace('/','=>'))
try:
os.remove(XMLLink)
os.remove('.'+XMLLink)
except:
aa=0
PublicFolder=projRoot0+'/Public/.projects/'+ProjToBeUnjoind
if os.path.exists(PublicFolder):
removePublic='rm -R -f \"%s\"' %(PublicFolder)
os.system(removePublic)
localMail=projPathAtLocal.replace(os.environ['HOME'],os.environ['HOME']+'/mail')
if os.path.exists(localMail):
removeMail='rm -R -f \"%s\"' %(localMail)
os.system(removeMail)
projPathAtRemoteAP=projPathInfo[4]
projNameA=projPathInfo[2]
if projPathAtRemote!=os.path.join(projPathAtRemoteAP,'.'+projInfoFileName):
moveMain='mv \"%s\" \"%s\"' %(projPathAtRemote, os.path.join(projPathAtRemoteAP,'.'+projInfoFileName))
os.system(moveMain)
newDeletedName=(os.path.join(projNameP,projInfoFileName)).replace('/','=>')
move2deleted=os.path.join(os.path.dirname(pathPrefix),'.deleted',newDeletedName)
move2='mv \"%s\" \"%s\"' %(os.path.join(projPathAtRemoteAP,'.'+projInfoFileName),move2deleted)
os.system(move2)
projInfoLink=os.path.join(os.path.dirname(pathPrefix),'.projInfo',newDeletedName)
if os.path.exists(projInfoLink):
os.remove(projInfoLink)
projPathAtLocal= projPathInfo[9]
localPathPrefix=projPathInfo[8]
localMail=projPathAtLocal.replace(os.environ['HOME'],os.path.join(os.environ['HOME'],'mail'),1)
if pidType=='shared':
snipTree(folderPathRaw=os.path.dirname(projPathAtLocal), stopRaw=localPathPrefix) #local main
snipTree(folderPathRaw=os.path.dirname(localMail), stopRaw=os.path.join(os.environ['HOME'],'mail'))
snipTree(folderPathRaw=projPathAtRemoteAP, stopRaw=pathPrefix)
remotePublicRoot=pathPrefix.replace('/Projects/shared', '/Public/.projects',1)
remotePublic=projPathAtRemoteAP.replace(pathPrefix,remotePublicRoot,1)
snipTree(folderPathRaw=remotePublic, stopRaw=remotePublicRoot)
print "Delete completed. Good-bye."
