def recursive_node(self, root_node, item_in):
for child_node in root_node.children:
if (str(child_node.name) == "reindex"):
tmp_dat = update_all_data(
experiments_path=str(child_node.experiments))
sp_grp = tmp_dat.spg_group
child_node_name = "reindex { " + sp_grp + " }"
else:
child_node_name = str(child_node.name)
new_item = QStandardItem(child_node_name)
new_item.idials_node = child_node
new_item.success = child_node.success
if new_item.idials_node.index == self.lst_idx[-1]:
new_item.setBackground(Qt.blue)
new_item.setForeground(Qt.white)
nxt_cmd_str = self.my_parent.controller.get_mode()
next_cmd = ">> { " + nxt_cmd_str + " }"
nxt_new_item = QStandardItem(str(next_cmd))
nxt_new_item.setBackground(Qt.gray)
nxt_new_item.setForeground(Qt.black)
nxt_new_item.idials_node = None
new_item.appendRow(nxt_new_item)
elif new_item.idials_node.index in self.lst_idx:
new_item.setBackground(Qt.white)
new_item.setForeground(Qt.blue)
elif new_item.idials_node.success == True:
new_item.setBackground(Qt.white)
new_item.setForeground(Qt.black)
else:
new_item.setBackground(Qt.white)
new_item.setForeground(Qt.gray)
new_item.setEditable(False) # not letting the user edit it
self.recursive_node(child_node, new_item)
item_in.appendRow(new_item)
def update_data(self, exp_json_path=None, refl_pikl_path=None):
# TODO: Change interface of function to not recieve list including
# predicted reflections, as long as it doesn't need it
logger.debug("\n\nrefl_pikl_path = %s", refl_pikl_path)
logger.debug("exp_json_path = %s %s", exp_json_path, "\n")
try:
try:
pickle_to_read = refl_pikl_path[0]
except ValueError:
pickle_to_read = None
logger.debug("experiments_path=", exp_json_path,
"reflections_path=", pickle_to_read)
self.all_data = update_all_data(experiments_path=exp_json_path,
reflections_path=pickle_to_read)
except InvalidExperimentListError:
# Probably an invalid json file - we sometimes try to parse these
self.all_data = update_all_data(experiments_path=None,
reflections_path=None)
except BaseException as e:
# We don't want to catch bare exceptions but don't know
# what this was supposed to catch. Log it.
logger.debug("Caught unknown exception type %s: %s",
type(e).__name__, e)
logger.debug("unable to update data panel")
self.all_data = update_all_data(experiments_path=None,
reflections_path=None)
update_data_label(self.a_data, self.all_data.a)
update_data_label(self.b_data, self.all_data.b)
update_data_label(self.c_data, self.all_data.c)
update_data_label(self.alpha_data, self.all_data.alpha)
update_data_label(self.beta_data, self.all_data.beta)
update_data_label(self.gamma_data, self.all_data.gamma)
update_data_label(self.r1_data, self.all_data.r1)
update_data_label(self.r2_data, self.all_data.r2)
update_data_label(self.r3_data, self.all_data.r3)
update_data_label(self.img_ran1_data, self.all_data.img_ran1)
update_data_label(self.img_ran2_data, self.all_data.img_ran2)
# update_data_label(self.oscil1_data, self.all_data.oscil1)
update_data_label(self.oscil2_data, self.all_data.oscil2)
update_data_label(self.e_time_data, self.all_data.e_time)
update_data_label(self.n_pans_data, self.all_data.n_pans)
update_data_label(data_label=self.x_px_size_data,
data_info=self.all_data.x_px_size,
n_dec=3)
update_data_label(data_label=self.y_px_size_data,
data_info=self.all_data.y_px_size,
n_dec=3)
update_data_label(self.gain_data, self.all_data.gain)
update_data_label(self.max_res_data, self.all_data.max_res)
update_data_label(self.xb_data, self.all_data.xb)
try:
det_mov = float(
self.all_data.n_pan_xb_yb) * 213.0 * self.all_data.y_px_size
update_data_label(self.yb_data, self.all_data.yb + det_mov)
except TypeError:
logger.debug(
"trying to add incompatible types for a label in data panel")
update_data_label(self.yb_data, self.all_data.yb)
update_data_label(data_label=self.w_lambda_data,
data_info=self.all_data.w_lambda,
n_dec=6)
# update_data_label(self.w_lambda_data, self.all_data.w_lambda)
update_data_label(self.d_dist_data, self.all_data.dd)
update_data_label(self.strn_sp_data, self.all_data.n_strng)
update_data_label(self.indx_sp_data, self.all_data.n_index)
update_data_label(self.refn_sp_data, self.all_data.n_refnd)
update_data_label(self.itgr_sum_data, self.all_data.n_integ_sum)
update_data_label(self.itgr_prf_data, self.all_data.n_integ_prf)
update_data_label(self.spgrp_data, self.all_data.spg_group)
def update_data(self,
dblock_json_path=None,
exp_json_path=None,
refl_pikl_path=None):
print "\nrefl_pikl_path =", refl_pikl_path, "\n"
if (dblock_json_path != None):
exp_json_path = dblock_json_path
self.all_data = update_all_data(experiments_path=exp_json_path,
reflections_path=refl_pikl_path)
update_data_label(self.a_data, self.all_data.a)
update_data_label(self.b_data, self.all_data.b)
update_data_label(self.c_data, self.all_data.c)
update_data_label(self.alpha_data, self.all_data.alpha)
update_data_label(self.beta_data, self.all_data.beta)
update_data_label(self.gamma_data, self.all_data.gamma)
update_data_label(self.r1_data, self.all_data.r1)
update_data_label(self.r2_data, self.all_data.r2)
update_data_label(self.r3_data, self.all_data.r3)
update_data_label(self.img_ran1_data, self.all_data.img_ran1)
update_data_label(self.img_ran2_data, self.all_data.img_ran2)
#update_data_label(self.oscil1_data, self.all_data.oscil1)
update_data_label(self.oscil2_data, self.all_data.oscil2)
update_data_label(self.e_time_data, self.all_data.e_time)
update_data_label(self.n_pans_data, self.all_data.n_pans)
update_data_label(data_label=self.x_px_size_data,
data_info=self.all_data.x_px_size,
n_dec=3)
update_data_label(data_label=self.y_px_size_data,
data_info=self.all_data.y_px_size,
n_dec=3)
update_data_label(self.gain_data, self.all_data.gain)
update_data_label(self.max_res_data, self.all_data.max_res)
update_data_label(self.xb_data, self.all_data.xb)
update_data_label(self.yb_data, self.all_data.yb)
update_data_label(data_label=self.w_lambda_data,
data_info=self.all_data.w_lambda,
n_dec=6)
#update_data_label(self.w_lambda_data, self.all_data.w_lambda)
update_data_label(self.d_dist_data, self.all_data.dd)
update_data_label(self.strn_sp_data, self.all_data.n_strng)
update_data_label(self.indx_sp_data, self.all_data.n_index)
update_data_label(self.refn_sp_data, self.all_data.n_refnd)
update_data_label(self.itgr_sum_data, self.all_data.n_integ_sum)
update_data_label(self.itgr_prf_data, self.all_data.n_integ_prf)
update_data_label(self.spgrp_data, self.all_data.spg_group)