def _unique(ctx: click.Context, key: str, o: Optional[str]) -> None:
"""Remove repetitions"""
docs = ctx.obj['documents']
unique_docs = []
duplis_docs = []
while True:
if not len(docs):
break
doc = docs.pop(0)
unique_docs.append(doc)
indices = []
for i, bottle in enumerate(docs):
if doc.get(key) == bottle.get(key):
indices.append(i)
duplis_docs.append(bottle)
logger.info('{}. repeated {} ⇒ {}'.format(
len(duplis_docs), key, doc.get(key)))
docs = [d for (i, d) in enumerate(docs) if i not in indices]
logger.info("Unique : {}".format(len(unique_docs)))
logger.info("Discarded: {}".format(len(duplis_docs)))
ctx.obj['documents'] = unique_docs
if o:
with open(o, 'w+') as f:
logger.info('Saving {1} documents in {0}..'.format(
o, len(duplis_docs)))
f.write(papis.commands.export.run(duplis_docs, to_format='bibtex'))
def _save(ctx: click.Context, bibfile: str, force: bool) -> None:
"""Save the documents imported in bibtex format"""
docs = ctx.obj['documents']
if not force:
c = papis.tui.utils.confirm('Are you sure you want to save?')
if not c:
print('Not saving..')
return
with open(bibfile, 'w+') as fd:
logger.info('Saving {1} documents in {0}..'.format(bibfile, len(docs)))
fd.write(papis.commands.export.run(docs, to_format='bibtex'))
def _ref(ctx: click.Context, out: Optional[str]) -> None:
"""Print the reference for a document"""
docs = ctx.obj['documents']
docs = papis.api.pick_doc(docs)
if not docs:
return
ref = docs[0]["ref"]
if out:
with open(out, 'w+') as fd:
fd.write(ref)
else:
print(ref)
def _filter_cited(ctx: click.Context, _files: List[str]) -> None:
"""
Filter cited documents from the read bib file
e.g.
papis bibtex read main.bib filter-cited -f main.tex save cited.bib
"""
found = []
for f in _files:
with open(f) as fd:
text = fd.read()
for doc in ctx.obj['documents']:
if re.search(doc["ref"], text):
found.append(doc)
logger.info('%s documents cited', len(found))
ctx.obj["documents"] = found
def _iscited(ctx: click.Context, _files: List[str]) -> None:
"""
Check which documents are not cited
e.g. papis bibtex iscited -f main.tex -f chapter-2.tex
"""
unfound = []
for f in _files:
with open(f) as fd:
text = fd.read()
for doc in ctx.obj['documents']:
if not re.search(doc["ref"], text):
unfound.append(doc)
logger.info('%s documents not cited', len(unfound))
for j, doc in enumerate(unfound):
logger.info('%s {c.Back.BLACK}{c.Fore.RED}%-80.80s{c.Style.RESET_ALL}',
j, papis.document.describe(doc))
