def setUp(self):
"""Set up tests."""
self.inCmpFile = path.join(DATA_DIR, "testsort.cmp.h5")
self.outCmpFile = mkstemp(suffix=".cmp.h5")[1]
copyfile(self.inCmpFile, self.outCmpFile)
self.options = Opt()
self.obj = SortService(self.outCmpFile, self.options)
def __init__(self, fileNames, options):
"""Initialize a ForQuiverService object.
Input:
fileNames : pbalign file names
options : pbalign options
"""
self.fileNames = fileNames
self.options = options
self._loadpulsesService = LoadPulsesService(
self.fileNames.pulseFileName, self.fileNames.outputFileName,
self.options)
self._loadchemistryService = LoadChemistryService(
self.fileNames.pulseFileName, self.fileNames.outputFileName,
self.options)
self._sortService = SortService(self.fileNames.outputFileName,
self.options)
self._repackService = RepackService(
self.fileNames.outputFileName,
self.fileNames.outputFileName + ".TMP")
