def test_make_modifications_report(self):
"""
Create a report object, do assertions on its properties, then assert that it gets written
"""
h5 = os.path.join(self._data_dir, "basemods.h5")
make_modifications_report(h5, 'rpt.json', self._output_dir, 60)
# deserialize report
log.info("Deserializing report {r}".format(
r=os.path.join(self._output_dir, 'rpt.json')))
s = None
with open(os.path.join(self._output_dir, 'rpt.json'), 'r') as f:
s = json.load(f)
report = dict_to_report(s)
self.assertEqual(1, len(report.plotGroups))
self.assertEqual(2, len(report.plotGroups[0].plots))
scatter = report.plotGroups[0].plots[0]
histo = report.plotGroups[0].plots[1]
self._assert_image_file(report.plotGroups[0].thumbnail)
self._assert_image_file(scatter.image)
self._assert_image_file(histo.image)
def test_make_modifications_report(self):
"""
Create a report object, do assertions on its properties, then assert that it gets written
"""
csv = os.path.join(self._data_dir, 'modifications.csv.gz')
make_modifications_report(csv, 'rpt.json', self._output_dir, 60, False)
# deserialize report
log.info("Deserializing report {r}".format(
r=os.path.join(self._output_dir, 'rpt.json')))
s = None
with open(os.path.join(self._output_dir, 'rpt.json'), 'r') as f:
s = json.load(f)
report = dict_to_report(s)
self.assertEqual(1, len(report.plotGroups))
self.assertEqual(2, len(report.plotGroups[0].plots))
scatter = report.plotGroups[0].plots[0]
histo = report.plotGroups[0].plots[1]
self._assert_image_file(report.plotGroups[0].thumbnail)
self._assert_image_file(scatter.image)
self._assert_image_file(histo.image)
def test_make_modifications_report(self):
"""
Create a report object, do assertions on its properties, then assert that it gets written
"""
h5 = os.path.join(self._data_dir, "basemods.h5")
make_modifications_report(h5, "rpt.json", self._output_dir, 60)
# deserialize report
log.info("Deserializing report {r}".format(r=os.path.join(self._output_dir, "rpt.json")))
s = None
with open(os.path.join(self._output_dir, "rpt.json"), "r") as f:
s = json.load(f)
report = dict_to_report(s)
validate_report_complete(self, report)
self.assertEqual(1, len(report.plotGroups))
self.assertEqual(2, len(report.plotGroups[0].plots))
scatter = report.plotGroups[0].plots[0]
histo = report.plotGroups[0].plots[1]
self._assert_image_file(report.plotGroups[0].thumbnail)
self._assert_image_file(scatter.image)
self._assert_image_file(histo.image)
def _create_modifications_report(self):
"""
Creates a Base Modifications report
"""
from pbreports.report.modifications import make_modifications_report
datadir = os.path.join(ROOT_DATA_DIR, 'modifications')
log.info('Creating modifications report using datadir {d}'.format(
d=datadir))
csv = os.path.join(datadir, 'modifications.csv.gz')
report_json = 'modifications.json'
output_json = os.path.join(self._output_dir, report_json)
dpi = 60
dumpdata = False
make_modifications_report(csv, report_json, self._output_dir, dpi,
dumpdata)
return self._deserialize_report(output_json)
def _create_modifications_report(self):
"""
Creates a Base Modifications report
"""
from pbreports.report.modifications import make_modifications_report
datadir = os.path.join(ROOT_DATA_DIR, 'modifications')
log.info(
'Creating modifications report using datadir {d}'.format(d=datadir))
csv = os.path.join(datadir, 'modifications.csv.gz')
report_json = 'modifications.json'
output_json = os.path.join(self._output_dir, report_json)
dpi = 60
dumpdata = False
make_modifications_report(
csv, report_json, self._output_dir, dpi, dumpdata)
return self._deserialize_report(output_json)
def run_report(args):
return make_modifications_report(args.csv, args.report, args.output, args.dpi, args.dumpdata)