def test_run(self):
"""Test function run()."""
inFN = op.join(self.testDir, "data/test_subset.fa")
outFN = op.join(self.testDir, "out/test_subset_unit.fa")
stdoutFN = op.join(self.testDir, "stdout/test_subset_unit.fa")
rules = SubsetRules(1, 1) # Full-length, non-chimeric
obj = ReadsSubsetExtractor(inFN, outFN, rules, True)
obj.run()
self.assertTrue(filecmp.cmp(outFN, stdoutFN))
