def test_get_eval_flag_dict_1(self):
"""Verify 'base' eval dictionary is returned."""
dict = eval_modes.get_eval_flag_dict("base")
with self.subTest():
self.assertEqual(len(dict.keys()), 13)
with self.subTest():
self.assertTrue(dict["check_locus_tag"])
def test_get_eval_flag_dict_6(self, mock_ask_yes_no):
"""Verify 'custom' eval dictionary is returned."""
dict = eval_modes.get_eval_flag_dict("custom")
with self.subTest():
self.assertEqual(len(dict.keys()), 13)
with self.subTest():
self.assertFalse(dict["check_locus_tag"])
def construct_tickets(list_of_data_dict, eval_data_dict, description_field,
required_keys, optional_keys, keywords):
"""Construct pdm_utils ImportTickets from parsed data dictionaries.
:param list_of_data_dict: List of import ticket data dictionaries.
:type list_of_data_dict: list
:param eval_data_dict: Dictionary of boolean evaluation flags.
:type eval_data_dict: dict
:param description_field:
Default value to set ticket.description_field attribute if not
present in the data dictionary.
:type description_field: str
:param required_keys: Set of keys required to be in the data dictionary.
:type required_keys: set
:param optional_keys:
Set of optional keys that are not required to be in the data dictionary.
:type optional_keys: set
:param keywords:
Set of valid keyword values that are handled differently
than other values.
:type keywords: set
:returns: List of pdm_utils ImportTicket objects.
:rtype: list
"""
tkt_id = 0
list_of_tickets = []
for dict in list_of_data_dict:
tkt_id += 1
# Each ticket should contain a distinct eval_flag dictionary object.
input_eval_mode = eval_data_dict["eval_mode"]
input_eval_flag_dict = eval_data_dict["eval_flag_dict"].copy()
result = modify_import_data(dict, required_keys, optional_keys,
keywords)
if result:
tkt = parse_import_ticket_data(dict)
tkt.id = tkt_id
# Only set description_field and eval_mode from parameters
# if they weren't set within the ticket.
if tkt.description_field == "":
tkt.description_field = description_field
# Add description_field to data_dict so that it
# can be saved to file.
tkt.data_dict["description_field"] = description_field
if tkt.eval_mode == "":
tkt.eval_mode = input_eval_mode
tkt.eval_flags = input_eval_flag_dict
# Add eval_mode to data_dict so that it can be saved to file.
tkt.data_dict["eval_mode"] = input_eval_mode
else:
if tkt.eval_mode in eval_modes.EVAL_MODES.keys():
tkt.eval_flags = eval_modes.get_eval_flag_dict(
tkt.eval_mode)
list_of_tickets.append(tkt)
else:
print("Unable to create ticket.")
return list_of_tickets
def test_get_eval_flag_dict_5(self):
"""Verify 'misc' eval dictionary is returned."""
dict = eval_modes.get_eval_flag_dict("misc")
self.assertFalse(dict["check_locus_tag"])
def test_get_eval_flag_dict_3(self):
"""Verify 'final' eval dictionary is returned."""
dict = eval_modes.get_eval_flag_dict("final")
self.assertFalse(dict["import_locus_tag"])
def test_get_eval_flag_dict_4(self):
"""Verify 'auto' evaluation dictionary is returned."""
dict = eval_modes.get_eval_flag_dict("auto")
self.assertFalse(dict["check_locus_tag"])