def main():
""" Main routine """
args = utils.get_args(sys.argv[1:])
action = sys.argv[1]
if action == "sub":
if not args.system:
args.system = detect_scheduler()
if not args.jobname:
args.jobname = os.path.basename(args.cmdfile)
core.phoenix_sub(args)
elif action == "step":
core.phoenix_step(args.directory, args.step, args.force_qc)
elif action == "run":
core.phoenix_run(args.directory, args.step, args.email_list)
else:
sys.exit("ERROR: Unknown action '{}'".format(action))
def test_successful_run_force_qc(self):
directory = "data/phoenix_dirs/qc_fail_example"
core.phoenix_run(directory, starting_step=1, force_qc=True)
def test_successful_run(self):
directory = "data/phoenix_dirs/simple_example"
core.phoenix_run(directory)
def test_fail_run_qc(self):
directory = "data/phoenix_dirs/simple_example"
os.remove(directory + "/*.tmp")
os.remove(directory + "/*.out")
os.remove(directory + "/*.err")
core.phoenix_run(directory, starting_step=1)
def test_fail_run_strongarm(self):
directory = "data/phoenix_dirs/yp1tkNml"
core.phoenix_run(directory)
def test_bad_email_list(self):
directory = "data/phoenix_dirs/yp1tkNml"
core.phoenix_run(directory, email_list="*****@*****.**")
def test_bad_starting_step(self):
directory = "data/phoenix_dirs/yp1tkNml"
core.phoenix_run(directory, starting_step="foo")
def test_not_a_phoenix_dir(self):
directory = "data/phoenix_dirs/yp1tkNml-pre"
core.phoenix_run(directory)
def test_run_nodir(self):
not_a_dir = "/path/to/blah"
core.phoenix_run(not_a_dir)