def autoproc_cli():
autoproc_kwargs = {
'datadir': selected_dir,
'imdir': reduced_dir,
'caldir': cal_dir,
'start': args.start,
'stop': args.stop,
'only': None,
'step': args.step,
'mastersky': not args.nomastersky,
'skyflattarg': not args.noskyflattarg,
'redo': args.redo,
'quiet': args.quiet,
'rmifiles': args.rmifiles,
'customcat': args.customcat,
'customcatfilt': str_list_to_list(args.customcatfilt),
}
autoproc(**autoproc_kwargs)
for f in glob.glob(os.path.join(reduced_dir, 'coadd*.fits')):
filename = os.path.basename(f)
f_reduced_dir = os.path.join(reduced_dir, filename)
f_coadd_dir = os.path.join(coadd_dir, filename)
if not args.quiet:
print('moving {0} to {1}'.format(f_reduced_dir, f_coadd_dir))
shutil.move(f_reduced_dir, f_coadd_dir)
from photopipe.reduction.auto.autoproc import autoproc
autoproc(datadir='/mnt/data/science/selected/',
imdir='/mnt/data/science/selected/reduced/',
nomastersky=True,
redo=1)
master.mkmaster('lmi', bias_calib, 'bias')
print('start mkmaster flat')
master.mkmaster('lmi', flat_calib, 'flat')
print('start move files master biases to selected folder')
for f in glob.glob(os.path.join(base_path, 'bias*.fits')):
filename = os.path.basename(f)
print('selected_path', selected_path)
f_base_path = os.path.join(base_path, filename)
print('f_base_path', f_base_path)
f_selected_path = os.path.join(selected_path, filename)
print('f_selected_path', f_selected_path)
print('moving {0} to {1}'.format(f_base_path, f_selected_path))
move(f_base_path, f_selected_path)
print('start move files master flats to selected folder')
for f in glob.glob(os.path.join(base_path, 'flat*.fits')):
filename = os.path.basename(f)
print('selected_path', selected_path)
f_base_path = os.path.join(base_path, filename)
print('f_base_path', f_base_path)
f_selected_path = os.path.join(selected_path, filename)
print('f_selected_path', f_selected_path)
print('moving {0} to {1}'.format(f_base_path, f_selected_path))
move(f_base_path, f_selected_path)
autoproc(datadir=selected_path + os.path.sep,
imdir=reduced_path + os.path.sep,
redo=1,
nomastersky=True)
amax=0.8,
reject_sat=False,
save_select=True,
noplot=False)
science_dict = preproc.choose_science(
'lmi',
workdir='/mnt/data/GW_TOO_18Aug2019/DG19yjnjc/',
targetdir='/work/data/GW_TOO_18Aug2019/DG19yjnjc/selected/',
cams=[0],
auto=True,
save_select=True,
calibrate=False,
noplot=False)
preproc.mkmaster('lmi', bias_calib, 'bias')
preproc.mkmaster('lmi', flat_calib, 'flat')
copyfile('flat_SDSS-Z.fits',
'/work/data/GW_TOO_18Aug2019/DG19yjnjc/selected/flat_SDSS-Z.fits')
copyfile('bias_C0.fits',
'/work/data/GW_TOO_18Aug2019/DG19yjnjc/selected/bias_C0.fits')
autoproc(datadir='/work/data/GW_TOO_18Aug2019/DG19yjnjc/selected/',
imdir='/work/data/GW_TOO_18Aug2019/DG19yjnjc/reduced/',
redo=1,
nomastersky=True)
copytree('/work/july/GRB161004A/r/reduced/',
'/mnt/data/output/july/GRB161004A/r/july/GRB161004A/r/reduced/')
# print('selected_path', selected_path)
# f_base_path = os.path.join(base_path, filename)
# print('f_base_path', f_base_path)
# f_selected_path = os.path.join(selected_path, filename)
# print('f_selected_path', f_selected_path)
# print('moving {0} to {1}'.format(f_base_path, f_selected_path))
# move(f_base_path, f_selected_path)
#
# print('start move files master flats to selected folder')
# for f in glob.glob(os.path.join(base_path, 'flat*.fits')):
# filename = os.path.basename(f)
# print('selected_path', selected_path)
# f_base_path = os.path.join(base_path, filename)
# print('f_base_path', f_base_path)
# f_selected_path = os.path.join(selected_path, filename)
# print('f_selected_path', f_selected_path)
# print('moving {0} to {1}'.format(f_base_path, f_selected_path))
# move(f_base_path, f_selected_path)
# autoproc(datadir=selected_path+os.path.sep,
# imdir=reduced_path+os.path.sep,
# redo=1, start='makesky', nomastersky=False)
autoproc(datadir=selected_path + os.path.sep,
imdir=reduced_path + os.path.sep,
redo=1,
start='stack',
debug=True,
nocrclean=False,
mastersky=True,
skyflattarg=True)
amin=0.2,
amax=0.8,
reject_sat=False,
save_select=True,
noplot=False)
science_dict = preproc.choose_science(
'lmi',
workdir='/mnt/data/july/GRB161004A/r/',
targetdir='/mnt/data/july/GRB161004A/r/selected/',
cams=[0],
auto=True,
save_select=True,
calibrate=False,
noplot=False)
preproc.mkmaster('lmi', bias_calib, 'bias')
preproc.mkmaster('lmi', flat_calib, 'flat')
copyfile('flat_SDSS-R.fits',
'/mnt/data/july/GRB161004A/r/selected/flat_SDSS-R.fits')
copyfile('bias_C0.fits', '/mnt/data/july/GRB161004A/r/selected/bias_C0.fits')
autoproc(datadir='/mnt/data/july/GRB161004A/r/selected/',
imdir='/work/july/GRB161004A/r/reduced/',
redo=1,
nomastersky=True)
copytree('/work/july/GRB161004A/r/reduced/',
'/mnt/data/output/july/GRB161004A/r/july/GRB161004A/r/reduced/')