def main():
option_parser, opts, args =\
parse_command_line_parameters(**script_info)
if opts.submit_jobs and not opts.make_jobs:
option_parser.error('Must pass -m if passing -s. (Sorry about this, '+\
'it\'s for backwards-compatibility.)')
min_args = 2
if len(args) != min_args:
option_parser.error(
'Program requires <commands file> and <job prefix>')
if (len(args[1]) > 10 or len(args[1]) == 0):
option_parser.error('job prefix must be 1-10 characters long')
commands = list(open(args[0]))
job_prefix = args[1]
if (not exists(opts.job_dir)):
try:
makedirs(opts.job_dir)
except OSError:
exit(" Jobs directory can not be created. " +
"Check for permissions or file with the same name: %s\n" %
opts.job_dir)
if (opts.make_jobs):
filenames = make_sge_jobs(commands, job_prefix, opts.queue,
opts.job_dir, opts.num_jobs)
else:
exit("Should we ever get here???")
if (opts.submit_jobs):
submit_cluster_jobs(filenames, opts.verbose, delay=opts.delay)
def main():
option_parser, opts, args =\
parse_command_line_parameters(**script_info)
if opts.submit_jobs and not opts.make_jobs:
option_parser.error('Must pass -m if passing -s. (Sorry about this, '+\
'it\'s for backwards-compatibility.)')
min_args = 2
if len(args) != min_args:
option_parser.error('Program requires <commands file> and <job prefix>')
if (len(args[1])>10 or len(args[1])==0):
option_parser.error('job prefix must be 1-10 characters long')
commands = list(open(args[0]))
job_prefix = args[1]
if(not exists(opts.job_dir)):
try:
makedirs(opts.job_dir)
except OSError:
exit(" Jobs directory can not be created. "
+"Check for permissions or file with the same name: %s\n"
% opts.job_dir)
if (opts.make_jobs):
filenames = make_torque_jobs(commands, job_prefix, opts.queue, opts.job_dir,opts.num_jobs)
else:
exit("Should we ever get here???")
if (opts.submit_jobs):
submit_cluster_jobs(filenames, opts.verbose)