def test_validate_option_values_raises_exception_if_quant_run_option_values_not_supplied():
options = {
po.READ_LENGTH.get_option_name(): "10,20",
}
with pytest.raises(schema.SchemaError):
po._validate_option_values(
_get_logger(), options, {}, [po.READ_LENGTH, po.READ_DEPTH])
def test_validate_option_values_raises_exception_for_invalid_option_values():
options = {
po.READ_LENGTH.get_option_name(): "abc"
}
with pytest.raises(schema.SchemaError):
po._validate_option_values(
_get_logger(), options, {}, [po.READ_LENGTH])
def test_validate_option_values_returns_correct_number_of_transformed_values():
num_values = 5
options = {
po.READ_LENGTH.get_option_name():
",".join([str(i) for i in range(1, num_values + 1)])
}
opt_vals, qr_opt_vals = po._validate_option_values(
_get_logger(), options, {}, [po.READ_LENGTH])
assert len(qr_opt_vals[po.READ_LENGTH.name]) == num_values
def test_validate_option_values_returns_correct_transformed_values():
len1 = 10
len2 = 20
options = {
po.READ_LENGTH.get_option_name(): str(len1) + "," + str(len2)
}
opt_vals, qr_opt_vals = po._validate_option_values(
_get_logger(), options, {}, [po.READ_LENGTH])
for val in [len1, len2]:
assert val in qr_opt_vals[po.READ_LENGTH.name]
def test_validate_option_values_returns_correct_number_of_options():
options = {
po.PLOT_FORMAT: "svg",
po.QUANT_METHOD: "Cufflinks",
po.READ_LENGTH: "10,20",
}
opt_vals, qr_opt_vals = po._validate_option_values(
_get_logger(), {o.get_option_name(): v for o, v in options.items()},
{}, options.keys())
assert len(opt_vals) == 1
assert len(qr_opt_vals) == 2
def test_validate_option_values_overrides_file_parameters_with_cl_options():
len1 = 10
len2 = 20
len3 = 30
file_options = {
po.READ_LENGTH.get_option_name(): str(len1) + "," + str(len2)
}
cl_options = {
po.READ_LENGTH.get_option_name(): str(len3)
}
opts, qr_opts = po._validate_option_values(
_get_logger(), cl_options, file_options, [po.READ_LENGTH])
assert len1 not in qr_opts[po.READ_LENGTH.name]
assert len2 not in qr_opts[po.READ_LENGTH.name]
assert len3 in qr_opts[po.READ_LENGTH.name]
