Exemplo n.º 1
0
    def __init__(self, parent=None, host=None, title="Plot"):
        """
        Constructor
        """
        #super class constructor
        super(PlotWidgetController, self).__init__(parent)
        
        
        self.setupUi(self)
        self.setWindowTitle(title)

        self._initialize()

        self.timeUnit = "a.u." #default ?
        self.speciesUnit = "a.u." #default ?
        self.speciesLabel = "Concentration" #default ?
        if host:
            self.timeUnit = str(host.optionTimeUnit)
            self.speciesUnit = str(host.optionSpeciesUnit)
            self.speciesLabel = str(host.optionSpeciesLabel)

        #options: time unit, logarithmic y-axis and 'show legend'
        # 24.2.2015 td 
        #options: species label, species unit 
        self.options = {
            OPTION_LABEL_X: "Time [%s]" % (self.timeUnit), #default
            OPTION_LABEL_Y: "%s [%s]" % (self.speciesLabel,self.speciesUnit), #default
            OPTION_LOG_Y_AXIS: self.checkBoxLogYAxis.isChecked(),
            OPTION_SHOW_LEGEND: self.checkBoxShowLegend.isChecked()
        }

        self.host = host
        self.title = title

        self.data = None
        self.labels = None

        self.fig = None
        self.canvas = None
        self.axes = None
        self.mpl_toolbar = None
        self.dpi = None
        
        self.useGrayColor = False
        
        self.plotStyleManager = PlotStyleManager()
        if self.title!='Plot': self.plotStyleManager.setDataType(self.title)

        self.plotStyle = {
            0: PLOT_LINE} #default plot style; if there are more elements, each numbered element corresponds to one data source
        self.plotColors = {}    # will be filled with colors on the first plot
class PlotWidgetController(AbstractViewController, Ui_PlotWidget):
    """
    The controller part for a plotting widget. The UI part is declared
    in plotwidget_v1.ui and then converted to ui_plotwidget.py.

    This plot widget can be fed with data via set methods and has several
    options to adjust the visualization of that data.

    @since: 2010-11-08
    """
    __author__ = "Moritz Wade"
    __contact__ = "*****@*****.**"
    __copyright__ = "Zuse Institute Berlin 2010"


    def __init__(self, parent=None, host=None, title="Plot"):
        """
        Constructor
        """
        #super class constructor
        super(PlotWidgetController, self).__init__(parent)
        
        
        self.setupUi(self)
        self.setWindowTitle(title)

        self._initialize()

        self.timeUnit = "a.u." #default ?
        if host:
            self.timeUnit = str(host.optionTimeUnit)

        #options: time unit, logarithmic y-axis and 'show legend'
        self.options = {
            OPTION_LABEL_X: "Time [%s]" % (self.timeUnit), #default
            OPTION_LOG_Y_AXIS: self.checkBoxLogYAxis.isChecked(),
            OPTION_SHOW_LEGEND: self.checkBoxShowLegend.isChecked()
        }

        self.host = host
        self.title = title

        self.data = None
        self.labels = None

        self.fig = None
        self.canvas = None
        self.axes = None
        self.mpl_toolbar = None
        self.dpi = None
        
        self.useGrayColor = False
        
        self.plotStyleManager = PlotStyleManager()
        if self.title!='Plot': self.plotStyleManager.setDataType(self.title)

        self.plotStyle = {
            0: PLOT_LINE} #default plot style; if there are more elements, each numbered element corresponds to one data source
        self.plotColors = {}    # will be filled with colors on the first plot



    def _updateView(self, data=None):
        '''
        '''
        #wrap it in a try-catch
        try:
            
            #if the data argument is not None
            #assign it to the instance var data
            if data:
                self.data = data

            if not self.fig:    # on first plot
                self.dpi = self.logicalDpiX()
                logging.info("Plotting at %s dpi." % self.dpi)
                self.fig = Figure(dpi=self.dpi)
                self.canvas = FigureCanvas(self.fig)

                self.axes = self.fig.add_subplot(111)
                self.mpl_toolbar = NavigationToolbar(self.canvas, None)

                left_vbox = QVBoxLayout(self.plotWrapper)
                left_vbox.addWidget(self.canvas)
                left_vbox.addWidget(self.mpl_toolbar)

                self.setAxesAndData()
                self.canvas.draw()
            else:
                self.axes.clear()
                self.setAxesAndData()
                self.canvas.draw()
        except Exception as e:
            logging.debug("PlotWidgetController._updateView: Error occurred: %s" % e)

    def _clearView(self):
        if self.axes:
            self.axes.clear()
        if self.canvas:
            self.canvas.draw()


    def setAxesAndData(self):
        try:
            #TODO: deprecated since a new plot style manager class!!!
            #if not self.plotStyleManager.colorMap: self.plotStyleManager.setColorMap('spectral')
            self.computeColors()
            
            #if no color map specified yet - set default to spectral
            
            from plotstylemanager import DATA_TYPES
            if not self.plotStyleManager.dataType and self.title in DATA_TYPES:self.plotStyleManager.dataType = self.title
            # some of this has to be done before the data is set
            self.setAxes()
            self.setData()

            # has to be done after the data is set
            if OPTION_SHOW_LEGEND in self.options and self.options[OPTION_SHOW_LEGEND]:
                self.axes.legend()

        except Exception as e:
            logging.debug("PlotWidgetController.setAxesAndData: Error occurred: %s" % e)


    def setAxes(self):
        '''
        Defines the plot's axes.
        '''
        try:
            self.axes.clear()
            self.axes.grid(True)
            
            
            # set x label
            for entityDataList in self.data.values():
                for entityData in entityDataList:
                    yLabel = str(entityData.getAxisLabel())
                    break
            self.axes.set_ylabel(yLabel)

            # set y label
            if OPTION_LABEL_X in self.options:
                self.axes.set_xlabel(str(self.options[OPTION_LABEL_X]))
            else:
                self.axes.set_xlabel("N/A")

            if OPTION_LOG_Y_AXIS in self.options and self.options[OPTION_LOG_Y_AXIS]:
                self.axes.set_yscale('log')

        except Exception as e:
            logging.debug("PlotWidgetController.setAxes: Error occurred: %s" % e)

    def setData(self):
        try:#wrap it in a try-catch close
            
            #BEGIN if-if there's some data
            if self.data:

                #get new cyclic iterators over the marker styles, line style and color                
                markerIt, lineIt= self.plotStyleManager.getMarkerIterator(), self.plotStyleManager.getLineIterator()
                expPlot = True
                markr = None
                
                #BEGIN for-iterating over the data values
                for j, entityDataList in enumerate(self.data.values()):
                    
                    #BEGIN for-iterating over the data entities
                    for entityData in entityDataList:
                        timepoints = entityData.timepoints
                        datapoints = entityData.datapoints
                        label = entityData.getId()

                        #first, get the right plotting style info for
                        #the current data entity:
                        #
                        #1. getting the associated entity id
                        if entityData.getAssociatedDataSet():
                            originID = entityData.getAssociatedDataSet().getId()
                            
                        #if no such id
                        else:
                            originID = None
                        #TODO: deprecated!!!
                        #2. check if there is some data source id associated
                        #   with data entity id
                        #if originID in self.dataSourceIDs:
                        #    dataIndex = self.dataSourceIDs.index(originID)
                        #    
                        #    #2a. if there is, get the corresponding plotting style
                        #    if dataIndex in self.plotStyle:
                        #        plotStyle = self.plotStyle[dataIndex]
                            #2b. if no such style is there, take the default plotting
                        #    #    style always associated with 0-key,
                        #    else:
                        #        plotStyle = self.plotStyle[0]
                                
                        #2c. if no such source id found, use default plotting style    
                        #else:
                        #    plotStyle = self.plotStyle[0]

                        # handle colour (prepend the colour code to style string)
                        if self.checkBoxOneColorPerRow.isChecked():
                            if label in self.plotColors:    # for string-based DataSet keys (e.g. loaded data file)
                                color = self.plotColors[label]
                            elif entityData.sbmlEntity and entityData.sbmlEntity in self.plotColors: # for sbmlEntity-based DataSet keys (e.g. simulation run)
                                color = self.plotColors[entityData.sbmlEntity]
                            else:
                                color = "black" # default... should never happen :)
                                logging.debug("PlotWidgetController.setData(): Reverting to default line color. This should not happen. ID: %s" % label)
                        else:
                            if (originID, label) in self.plotColors:    # for string-based DataSet keys (e.g. loaded data file)
                                color = self.plotColors[(originID, label)]
                            elif entityData.sbmlEntity and (originID, entityData.sbmlEntity) in self.plotColors: # for sbmlEntity-based DataSet keys (e.g. simulation run)
                                color = self.plotColors[(originID, entityData.sbmlEntity)]
                            else:
                                color = "black" # default... should never happen :)
                                logging.debug("PlotWidgetController.setData(): Reverting to default line color. This should not happen. ID: %s" % label)
                        #print 'data type: '+str((originID,label,self.title))
                        # 31.07.12 td
                        #   inserted an additional space in front of plotLabel 
                        #   (in case of IDs with underscore as first character)
                        # 26.07.12 td
                        #   the following line yields no originID in plot label if only one column 
                        #   is selected in sens overview...
                        # if len(entityDataList) > 1:
                        if not self.useGrayColor:
                            if originID and ("Sensitivity (Plot)" in self.title):  # awful hack
                                plotLabel = " %s (%s) " % (label, originID)
                            else:
                                plotLabel = " %s " % (label)
                            if expPlot: markr = markerIt.next()
                            if 'Simulation' in self.title:
                                if 'Simulation' in originID:
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle='-',label=plotLabel)#,marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = True
                                else:
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle='-',marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)#,marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = False
                            else:
                                #while markr=='o': markr = markerIt.next()
                                self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                expPlot = True
                            #if plotStyle == PLOT_LINE:
                            #    self.axes.plot(timepoints, datapoints, color=color, linestyle=lineIt.next(), label=plotLabel)
                            #elif plotStyle == PLOT_POINT or plotStyle == PLOT_CIRCLE:
                            #    self.axes.plot(timepoints, datapoints, color=color, linestyle= "", marker=plotStyle, label=plotLabel)
                        else:
                            if originID and ("Sensitivity (Plot)" in self.title):  # awful hack
                                plotLabel = " %s (%s) " % (label, originID)
                            else:
                                plotLabel = " %s " % (label)
                            if expPlot: markr = markerIt.next()
                            if 'Simulation' in self.title:
                                if 'Simulation' in originID:                                    
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = True
                                else:
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = False
                            else:
                                if markr in 'o': markr = markerIt.next()
                                self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                expPlot = True
                    #END for
                    
                #END for
                
            #END if
            
        #catch exception and write to the debug logger
        except Exception as e:
            logging.debug("PlotWidgetController.setData: Error occurred: %s" % e)

    def computeColors(self):
        """
        Takes the number of data items (e.g. Species) and computes one color for each one.
        """
        #check data object present
        if not self.data:
            
            #error - info: no data source to color
            logging.error("PlotWidgetController: Can't compute colors without data.")
            
            return

        try:
            
            #check, whether the color per row checkbox is activated
            if self.checkBoxOneColorPerRow.isChecked():
                
                
                entityIDs = self.getEntityIDs()
                
                #no entries - nothing to color
                if not entityIDs:
                    return
                
                #number of entity ids determines the number of color object to construct
                #numItems = len(entityIDs)
            else:
                
                selectedSourceEntityTuples = self.getSelectedCombinations()
                #numItems = len(selectedSourceEntityTuples)
            #TODO: fix color item issue - only 10 items in 'spectral' though should
            #TODO: be 22 ?!
            #
            #get the color map - one color object per item (entity)
            #colors = self.map_colors(range(numItems), DEFAULT_COLORMAP)
            #if self.plotStyleManager.items<numItems:
            if self.checkBoxOneColorPerRow.isChecked() and entityIDs: self.plotStyleManager.setItems(len(entityIDs))
            elif selectedSourceEntityTuples:self.plotStyleManager.setItems(len(selectedSourceEntityTuples))
            colorIt = self.plotStyleManager.getColorIterator()
            self.plotColors = {}

            if self.checkBoxOneColorPerRow.isChecked():
                for j, entityID in enumerate(entityIDs):
                    self.plotColors[entityID] = colorIt.next()
            else:
                for j, sourceEntityCombination in enumerate(selectedSourceEntityTuples):
                    self.plotColors[sourceEntityCombination] = colorIt.next()

        except Exception, e:
            logging.debug("PlotWidgetController.computeColors(): Error while computing colors: %s" % e)
Exemplo n.º 3
0
class PlotWidgetController(AbstractViewController, Ui_PlotWidget):
    """
    The controller part for a plotting widget. The UI part is declared
    in plotwidget_v1.ui and then converted to ui_plotwidget.py.

    This plot widget can be fed with data via set methods and has several
    options to adjust the visualization of that data.

    @since: 2010-11-08
    """
    __author__ = "Moritz Wade"
    __contact__ = "*****@*****.**"
    __copyright__ = "Zuse Institute Berlin 2010"


    def __init__(self, parent=None, host=None, title="Plot"):
        """
        Constructor
        """
        #super class constructor
        super(PlotWidgetController, self).__init__(parent)
        
        
        self.setupUi(self)
        self.setWindowTitle(title)

        self._initialize()

        self.timeUnit = "a.u." #default ?
        self.speciesUnit = "a.u." #default ?
        self.speciesLabel = "Concentration" #default ?
        if host:
            self.timeUnit = str(host.optionTimeUnit)
            self.speciesUnit = str(host.optionSpeciesUnit)
            self.speciesLabel = str(host.optionSpeciesLabel)

        #options: time unit, logarithmic y-axis and 'show legend'
        # 24.2.2015 td 
        #options: species label, species unit 
        self.options = {
            OPTION_LABEL_X: "Time [%s]" % (self.timeUnit), #default
            OPTION_LABEL_Y: "%s [%s]" % (self.speciesLabel,self.speciesUnit), #default
            OPTION_LOG_Y_AXIS: self.checkBoxLogYAxis.isChecked(),
            OPTION_SHOW_LEGEND: self.checkBoxShowLegend.isChecked()
        }

        self.host = host
        self.title = title

        self.data = None
        self.labels = None

        self.fig = None
        self.canvas = None
        self.axes = None
        self.mpl_toolbar = None
        self.dpi = None
        
        self.useGrayColor = False
        
        self.plotStyleManager = PlotStyleManager()
        if self.title!='Plot': self.plotStyleManager.setDataType(self.title)

        self.plotStyle = {
            0: PLOT_LINE} #default plot style; if there are more elements, each numbered element corresponds to one data source
        self.plotColors = {}    # will be filled with colors on the first plot



    def _updateView(self, data=None):
        '''
        '''
        #wrap it in a try-catch
        try:
            
            #if the data argument is not None
            #assign it to the instance var data
            if data:
                self.data = data

            if not self.fig:    # on first plot
                self.dpi = self.logicalDpiX()
                logging.info("Plotting at %s dpi." % self.dpi)
                self.fig = Figure(dpi=self.dpi)
                self.canvas = FigureCanvas(self.fig)

                self.axes = self.fig.add_subplot(111)
                self.mpl_toolbar = NavigationToolbar(self.canvas, None)

                left_vbox = QVBoxLayout(self.plotWrapper)
                left_vbox.addWidget(self.canvas)
                left_vbox.addWidget(self.mpl_toolbar)

                self.setAxesAndData()
                self.canvas.draw()
            else:
                self.axes.clear()
                self.setAxesAndData()
                self.canvas.draw()
        except Exception as e:
            logging.debug("PlotWidgetController._updateView: Error occurred: %s" % e)

    def _clearView(self):
        if self.axes:
            self.axes.clear()
        if self.canvas:
            self.canvas.draw()


    def setAxesAndData(self):
        try:
            #TODO: deprecated since a new plot style manager class!!!
            #if not self.plotStyleManager.colorMap: self.plotStyleManager.setColorMap('spectral')
            self.computeColors()
            
            #if no color map specified yet - set default to spectral
            
            from plotstylemanager import DATA_TYPES
            if not self.plotStyleManager.dataType and self.title in DATA_TYPES:self.plotStyleManager.dataType = self.title
            # some of this has to be done before the data is set
            self.setAxes()
            self.setData()

            # has to be done after the data is set
            if OPTION_SHOW_LEGEND in self.options and self.options[OPTION_SHOW_LEGEND]:
                self.axes.legend()

        except Exception as e:
            logging.debug("PlotWidgetController.setAxesAndData: Error occurred: %s" % e)


    def setAxes(self):
        '''
        Defines the plot's axes.
        '''
        try:
            self.axes.clear()
            self.axes.grid(True)
            
            
            # set x label
            if OPTION_LABEL_Y in self.options:
                yLabel = str(self.options[OPTION_LABEL_Y])
            else:
                for entityDataList in self.data.values():
                    for entityData in entityDataList:
                        yLabel = str(entityData.getAxisLabel())
                        break
            self.axes.set_ylabel(yLabel,fontsize="x-large")

            # set y label
            if OPTION_LABEL_X in self.options:
                self.axes.set_xlabel(str(self.options[OPTION_LABEL_X]),fontsize="x-large")
            else:
                self.axes.set_xlabel("N/A")

            if OPTION_LOG_Y_AXIS in self.options and self.options[OPTION_LOG_Y_AXIS]:
                self.axes.set_yscale('log')

        except Exception as e:
            logging.debug("PlotWidgetController.setAxes: Error occurred: %s" % e)

    def setData(self):
        try:#wrap it in a try-catch close
            
            #BEGIN if-if there's some data
            if self.data:

                #get new cyclic iterators over the marker styles, line style and color                
                markerIt, lineIt= self.plotStyleManager.getMarkerIterator(), self.plotStyleManager.getLineIterator()
                expPlot = True
                markr = None
                
                #BEGIN for-iterating over the data values
                for j, entityDataList in enumerate(sorted(self.data.values())):
                    
                    #BEGIN for-iterating over the data entities
                    for entityData in entityDataList:
                        timepoints = entityData.timepoints
                        datapoints = entityData.datapoints
                        label = entityData.getId()

                        #first, get the right plotting style info for
                        #the current data entity:
                        #
                        #1. getting the associated entity id
                        if entityData.getAssociatedDataSet():
                            originID = entityData.getAssociatedDataSet().getId()
                            
                        #if no such id
                        else:
                            originID = None
                        #TODO: deprecated!!!
                        #2. check if there is some data source id associated
                        #   with data entity id
                        #if originID in self.dataSourceIDs:
                        #    dataIndex = self.dataSourceIDs.index(originID)
                        #    
                        #    #2a. if there is, get the corresponding plotting style
                        #    if dataIndex in self.plotStyle:
                        #        plotStyle = self.plotStyle[dataIndex]
                            #2b. if no such style is there, take the default plotting
                        #    #    style always associated with 0-key,
                        #    else:
                        #        plotStyle = self.plotStyle[0]
                                
                        #2c. if no such source id found, use default plotting style    
                        #else:
                        #    plotStyle = self.plotStyle[0]

                        # handle colour (prepend the colour code to style string)
                        if self.checkBoxOneColorPerRow.isChecked():
                            if label in self.plotColors:    # for string-based DataSet keys (e.g. loaded data file)
                                color = self.plotColors[label]
                            elif entityData.sbmlEntity and entityData.sbmlEntity in self.plotColors: # for sbmlEntity-based DataSet keys (e.g. simulation run)
                                color = self.plotColors[entityData.sbmlEntity]
                            else:
                                color = "black" # default... should never happen :)
                                logging.debug("PlotWidgetController.setData(): Reverting to default line color. This should not happen. ID: %s" % label)
                        else:
                            if (originID, label) in self.plotColors:    # for string-based DataSet keys (e.g. loaded data file)
                                color = self.plotColors[(originID, label)]
                            elif entityData.sbmlEntity and (originID, entityData.sbmlEntity) in self.plotColors: # for sbmlEntity-based DataSet keys (e.g. simulation run)
                                color = self.plotColors[(originID, entityData.sbmlEntity)]
                            else:
                                color = "black" # default... should never happen :)
                                logging.debug("PlotWidgetController.setData(): Reverting to default line color. This should not happen. ID: %s" % label)
                        #print 'data type: '+str((originID,label,self.title))
                        # 31.07.12 td
                        #   inserted an additional space in front of plotLabel 
                        #   (in case of IDs with underscore as first character)
                        # 26.07.12 td
                        #   the following line yields no originID in plot label if only one column 
                        #   is selected in sens overview...
                        # if len(entityDataList) > 1:
                        if not self.useGrayColor:
                            if originID and ("Sensitivity (Plot)" in self.title):  # awful hack
                                plotLabel = " %s (%s) " % (label, originID)
                            else:
                                plotLabel = " %s " % (label)
                            if expPlot: markr = markerIt.next()
                            if 'Simulation' in self.title:
                                if 'Simulation' in originID:
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle='-',label=plotLabel)#,marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = True
                                else:
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle='-',marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)#,marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = False
                            elif 'Sensitivity' in self.title:
                                self.axes.plot(timepoints,datapoints,color=color,linestyle='-',label=plotLabel)#,marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                expPlot = False
                            else:    #while markr=='o': markr = markerIt.next()
                                self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                expPlot = True
                            #if plotStyle == PLOT_LINE:
                            #    self.axes.plot(timepoints, datapoints, color=color, linestyle=lineIt.next(), label=plotLabel)
                            #elif plotStyle == PLOT_POINT or plotStyle == PLOT_CIRCLE:
                            #    self.axes.plot(timepoints, datapoints, color=color, linestyle= "", marker=plotStyle, label=plotLabel)
                        else:
                            if originID and ("Sensitivity (Plot)" in self.title):  # awful hack
                                plotLabel = " %s (%s) " % (label, originID)
                            else:
                                plotLabel = " %s " % (label)
                            if not expPlot: markr = markerIt.next()
                            if 'Simulation' in self.title:
                                if expPlot: markr = markerIt.next()
                                if 'Simulation' in originID:
                                    if markr=='o': markr = markerIt.next()                           
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = True
                                else:
                                    self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                    expPlot = False
                            elif 'Sensitivity' in self.title:
                                self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)#,marker=markr,markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                expPlot = False
                            else:
                                if markr in 'o': markr = markerIt.next()
                                self.axes.plot(timepoints,datapoints,color=color,linestyle=lineIt.next(),marker='o',markeredgecolor='black',markerfacecolor=color,label=plotLabel)
                                expPlot = True
                    #END for
                    
                #END for
                
            #END if
            
        #catch exception and write to the debug logger
        except Exception as e:
            logging.debug("PlotWidgetController.setData: Error occurred: %s" % e)

    def computeColors(self):
        """
        Takes the number of data items (e.g. Species) and computes one color for each one.
        """
        #check data object present
        if not self.data:
            
            #error - info: no data source to color
            logging.error("PlotWidgetController: Can't compute colors without data.")
            
            return

        try:
            
            #check, whether the color per row checkbox is activated
            if self.checkBoxOneColorPerRow.isChecked():
                
                
                entityIDs = self.getEntityIDs()
                
                #no entries - nothing to color
                if not entityIDs:
                    return
                
                #number of entity ids determines the number of color object to construct
                #numItems = len(entityIDs)
            else:
                
                selectedSourceEntityTuples = self.getSelectedCombinations()
                #numItems = len(selectedSourceEntityTuples)
            #TODO: fix color item issue - only 10 items in 'spectral' though should
            #TODO: be 22 ?!
            #
            #get the color map - one color object per item (entity)
            #colors = self.map_colors(range(numItems), DEFAULT_COLORMAP)
            #if self.plotStyleManager.items<numItems:
            if self.checkBoxOneColorPerRow.isChecked() and entityIDs: self.plotStyleManager.setItems(len(entityIDs))
            elif selectedSourceEntityTuples:self.plotStyleManager.setItems(len(selectedSourceEntityTuples))
            colorIt = self.plotStyleManager.getColorIterator()
            self.plotColors = {}

            if self.checkBoxOneColorPerRow.isChecked():
                for j, entityID in enumerate(entityIDs):
                    self.plotColors[entityID] = colorIt.next()
            else:
                for j, sourceEntityCombination in enumerate(selectedSourceEntityTuples):
                    self.plotColors[sourceEntityCombination] = colorIt.next()

        except Exception, e:
            logging.debug("PlotWidgetController.computeColors(): Error while computing colors: %s" % e)