def testWelchTest(self):
"""Verify computation of Welsh's t-test"""
from plugins.groups.statisticalTests.Welch import Welch
ttest = Welch(preferences)
# ground truth found with t.test in R v2.13.0
oneSided, twoSided, lowerCI, upperCI, effectSize, note = ttest.run(
[5, 4, 6, 4, 3], [5, 2, 2, 5, 6, 7], [1, 1, 1, 1, 1],
[1, 1, 1, 1, 1, 1], None, 0.95)
self.assertAlmostEqual(oneSided, 0.5390501783)
self.assertAlmostEqual(twoSided, 0.9218996432)
self.assertAlmostEqual(lowerCI, -238.023177152)
self.assertAlmostEqual(upperCI, 218.023177152)
self.assertAlmostEqual(effectSize, -10.0)
oneSided, twoSided, lowerCI, upperCI, effectSize, note = ttest.run(
[3.4, 6.3, 5.3, 1.4, 6.3, 6.3], [3.5, 6.4, 5.2, 1.3, 6.4, 6.2],
[1, 1, 1, 1, 1, 1], [1, 1, 1, 1, 1, 1], None, 0.95)
self.assertAlmostEqual(oneSided, 0.5)
self.assertAlmostEqual(twoSided, 1.0)
self.assertAlmostEqual(lowerCI, -262.6606201199)
self.assertAlmostEqual(upperCI, 262.6606201199)
self.assertAlmostEqual(effectSize, 0.0)
oneSided, twoSided, lowerCI, upperCI, effectSize, note = ttest.run(
[1, 2, 3, 4, 5, 6, 7, 8, 9, 10],
[10, 20, 30, 40, 50, 60, 70, 80, 90, 100],
[1, 1, 1, 1, 1, 1, 1, 1, 1, 1], [1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
None, 0.95)
self.assertAlmostEqual(oneSided, 0.9997146330)
self.assertAlmostEqual(twoSided, 0.0005707338)
self.assertAlmostEqual(lowerCI, -7120.16500998)
self.assertAlmostEqual(upperCI, -2779.83499002)
self.assertAlmostEqual(effectSize, -4950.0)
def testWelchTest(self): """Verify computation of Welsh's t-test""" from plugins.groups.statisticalTests.Welch import Welch ttest = Welch(preferences) # ground truth found with t.test in R v2.13.0 oneSided, twoSided, lowerCI, upperCI, effectSize, note = ttest.run([5,4,6,4,3],[5,2,2,5,6,7], [1,1,1,1,1], [1,1,1,1,1,1], None, 0.95) self.assertAlmostEqual(oneSided, 0.5390501783) self.assertAlmostEqual(twoSided, 0.9218996432) self.assertAlmostEqual(lowerCI, -238.023177152) self.assertAlmostEqual(upperCI, 218.023177152) self.assertAlmostEqual(effectSize, -10.0) oneSided, twoSided, lowerCI, upperCI, effectSize, note = ttest.run([3.4,6.3,5.3,1.4,6.3,6.3],[3.5,6.4,5.2,1.3,6.4,6.2], [1,1,1,1,1,1], [1,1,1,1,1,1], None, 0.95) self.assertAlmostEqual(oneSided, 0.5) self.assertAlmostEqual(twoSided, 1.0) self.assertAlmostEqual(lowerCI, -262.6606201199) self.assertAlmostEqual(upperCI, 262.6606201199) self.assertAlmostEqual(effectSize, 0.0) oneSided, twoSided, lowerCI, upperCI, effectSize, note = ttest.run([1,2,3,4,5,6,7,8,9,10],[10,20,30,40,50,60,70,80,90,100], [1,1,1,1,1,1,1,1,1,1], [1,1,1,1,1,1,1,1,1,1], None, 0.95) self.assertAlmostEqual(oneSided, 0.9997146330) self.assertAlmostEqual(twoSided, 0.0005707338) self.assertAlmostEqual(lowerCI, -7120.16500998) self.assertAlmostEqual(upperCI, -2779.83499002) self.assertAlmostEqual(effectSize, -4950.0)
#=======================================================================