class PopulationObserver:
def __init__(self,
ckpt,
path='',
env_id='Boxing-ramNoFrameskip-v4',
slow_factor=0.04):
self.slow_factor = slow_factor
self.util = name2class[env_id]
self.serializer = Serializer(path)
self.to_observe: Population = self.serializer.load(ckpt)
self.env = gym.make(env_id)
self.util = name2class[env_id]
self.state_shape = (self.util.state_dim * 4, )
self.action_dim = self.util.action_space_dim
self.player = Individual(self.state_shape, self.action_dim,
self.util.goal_dim)
def observe(self):
print('--------Population Observation Stared--------')
extremes = []
for goal in self.util['objectives']:
extremes.append((goal,
max(self.to_observe.individuals,
key=lambda x: goal.make(x))))
print('--------Observing extreme individuals--------')
for goal, individual in extremes:
print('Best regarding', goal, ':')
pprint(individual.behavior_stats)
self.play(-1, individual.get_weights())
for index, individual in enumerate(self.to_observe.individuals):
print('Individual %d stats :' % index)
pprint(individual.behavior_stats)
self.play(index, individual.get_weights())
def play(self, index, player_weights):
self.player.set_weights(player_weights)
try:
done = False
observation = self.util.preprocess(self.env.reset())
observation = np.concatenate(
[observation, observation, observation, observation])
while not done:
self.env.render()
action = self.player.pi.policy.get_action(observation,
eval=True)
for _ in range(4):
observation_, _, done, _ = self.env.step(action)
observation_ = self.util.preprocess(observation_)
observation = np.concatenate(
[observation[len(observation) // 4:], observation_])
sleep(self.slow_factor)
except KeyboardInterrupt:
print('individual %d skipped' % index)
def mutate(self, dna:Individual):
'''
O operador de mutacao inverte um bit escolhido aleatoriamente dentro\n
do cromossomo de um individuo, respeitando uma taxa de mutacao.
'''
if(random() < self.mutation_rate):
num1 = randint(0, len(dna.chromosome)-1)
gene = dna.chromosome[num1]
dna.chromosome[num1] = abs(gene-1)
dna.fitness = self.get_fitness(target, dna.chromosome)
def init_population(pop_size, bounds, mode="minimization"):
"""
initialize non-zero positions and interaction matrix
:param pop_size: population size
:param bounds: upper and lower bounds
:param mode: whether minimization or maximization
:return:
"""
population = Population(pop_size, mode)
vec_len = len(bounds)
half = vec_len // 2
for i in range(pop_size):
vector = []
# for defining interaction structure
for j in range(half):
if random.uniform(bounds[j][0], bounds[j][1]) < 0.5:
vector.append(0)
else:
vector.append(1)
# for defining interactions
for j in range(half):
vector.append(
random.uniform(bounds[half + j][0], bounds[half + j][1]))
population.add_individual(Individual(vector))
return population
def __init__(self,
ckpt,
path='',
env_id='Boxing-ramNoFrameskip-v4',
slow_factor=0.04):
self.slow_factor = slow_factor
self.util = name2class[env_id]
self.serializer = Serializer(path)
self.to_observe: Population = self.serializer.load(ckpt)
self.env = gym.make(env_id)
self.util = name2class[env_id]
self.state_shape = (self.util.state_dim * 4, )
self.action_dim = self.util.action_space_dim
self.player = Individual(self.state_shape, self.action_dim,
self.util.goal_dim)
def uniform_random(pop_size, bounds, mode="minimization"):
population = Population(pop_size, mode)
for i in range(pop_size):
vector = []
for j in range(len(bounds)):
vector.append(random.uniform(bounds[j][0], bounds[j][1]))
population.add_individual(Individual(vector))
return population
def mgbde_run(benchmark, bounds, pop_size, maxFE, F):
#--- INITIALIZE A POPULATION (step #1) ----------------+
population = init.uniform_random(pop_size, bounds)
cr = init_cr(pop_size)
mutation_strategy = init_mutation_strategies(pop_size)
#--- SOLVE --------------------------------------------+
# cycle through each generation (step #2)
while benchmark.numFE < maxFE:
best = init_eval(population, benchmark.eval)
# cycle through each individual in the population
for j in range(pop_size):
x_t = population.get(j).vector
#--- MUTATION (step #3.A) ---------------------+
if mutation_strategy[j] == 0:
v_donor = gaussian_mutation(best, population.get(j), bounds)
else:
v_donor = de_best_1_mutation(best, population, j, bounds, F)
#--- RECOMBINATION (step #3.B) ----------------+
v_trial = crossover(v_donor, x_t, cr[j])
#--- GREEDY SELECTION (step #3.C) -------------+
score_trial, score_target = selection(population, j,
benchmark.eval,
Individual(v_trial))
# --- UPDATE CR (step #3.C) -------------+
cr[j] = update_cr(score_trial, score_target, cr[j])
#--- SCORE KEEPING --------------------------------+
# gen_avg = sum(gen_scores) / pop_size # current generation avg. fitness
# gen_best = min(gen_scores) # fitness of best individual
# gen_sol = population.get(gen_scores.index(min(gen_scores))) # solution of best individual
best = population.get_best()
if benchmark.numFE % 10000 == 0:
print('numFE:', benchmark.numFE)
# print(' > GENERATION AVERAGE:', gen_avg)
# print(' > GENERATION BEST:', gen_best)
# print(' > BEST SOLUTION:', gen_sol)
print('----------------------------------------------')
print(' > GENERATION BEST:', best.score)
print(' > GENERATION BEST:', best.vector)
print('----------------------------------------------')
if benchmark.is_solution(best):
print('Find a solution! numFE:{0}'.format(benchmark.numFE))
break
return population
def generate_population(self, max_population:int)->Population:
'''
Gera uma populacao inicial completamente aleatoria.\n
Uma populacao e composta por solucoes diferentes representando individuos,
para esse caso cada solucao representa uma imagem.
'''
population = []
for i in range(self.max_population):
points = random_image(len(self.target))
fitness = self.get_fitness(self.target, points)
population.append(Individual(points, fitness))
return Population(population)
def generate_offspring(self, parent_population, crossover, repair,
max_exchanges, problem, fitness, mutation):
size_population = len(parent_population)
children = []
while size_population * 2 - 1 > len(parent_population):
# select 4 random pot. parents
potential_parents = [
random.randint(0, size_population - 1),
random.randint(0, size_population - 1),
random.randint(0, size_population - 1),
random.randint(0, size_population - 1)
]
# perform tournament selection to keep 2
parentA = self.tournament_selection(
parent_population[potential_parents[0]],
parent_population[potential_parents[1]])
parentB = self.tournament_selection(
parent_population[potential_parents[2]],
parent_population[potential_parents[3]])
# perform crossover
[childA,
childB] = crossover.perform_crossover(parentA.genotype,
parentB.genotype)
# perform mutation
childA = repair.get_new_child(
max_exchanges, problem, childA,
fitness.calculate_fitness_genotype(childA, problem), fitness)
childB = repair.get_new_child(
max_exchanges, problem, childB,
fitness.calculate_fitness_genotype(childB, problem), fitness)
# add to children
o_childA = Individual(childA[0], childA[1])
o_childA = mutation.mutate(o_childA, fitness, problem)
o_childB = Individual(childB[0], childB[1])
o_childB = mutation.mutate(o_childB, fitness, problem)
parent_population.append(Individual(childA[0], childA[1]))
parent_population.append(Individual(childB[0], childB[1]))
def generate_population(self, max_population: int) -> Population:
'''
Gera uma população inicial aleatória.\n
Cada indivíduo na população é representado por um conjunto de cidades
que devem ser percorridas respeitando o arranjo inicial.\n
Para criar indivíduos diferentes é necessário permutar a ordem que
as cidades devem ser percorridas.
'''
permut_rate = 1.0
population = []
while (len(population) < max_population):
if (random() < permut_rate):
cities = self.permut(self.cities)
population.append(Individual(cities))
return Population(population)
def crossover(self, dna1:Individual, dna2:Individual)->Individual:
'''
O operador de crossover utiliza dois cromossomos para gerar um novo cromossomo
representando um filho.\n
Um ponto de corte e escolhido aleatoriamente para separar a cadeia
de bits dos pais e o filho e formado com parte dos genes de cada pai.
'''
if(random() > self.crossover_rate): return dna1
cutoff = randint(0, len(dna1.chromosome)-1)
father_genes = dna1.chromosome[0:cutoff]
mother_genes = dna2.chromosome[cutoff:]
chromosome = father_genes + mother_genes
fitness = self.get_fitness(target, chromosome)
return Individual(points=chromosome, fitness=fitness)
def run_train():
env = gym.make("Pong-ram-v0").env
observation_space = env.observation_space.shape[0] #Box(128,)
action_space = env.action_space.n # Discrete(6)
conf.set_params(observation_space=observation_space, action_space=action_space)
I = Individual(conf)
P = Population(I,conf)
S = RouletteWheelSelection()
C = Crossover(conf)
M = Mutation(conf.mutation_rate)
g = GA(P, S, C, M)
best_individual = g.run(env,num_games=conf.num_games_per_individual, visualization=False)
dump_model(best_individual, conf.save_path)
env.close()
def run(benchmark, bounds, pop_size, F, CR, maxFE):
#--- INITIALIZE A POPULATION (step #1) ----------------+
population = init.uniform_random(pop_size, bounds)
#--- SOLVE --------------------------------------------+
# cycle through each generation (step #2)
while benchmark.numFE < maxFE:
# cycle through each individual in the population
for j in range(pop_size):
#--- MUTATION (step #3.A) ---------------------+
v_donor, x_t = mutation(population, j, bounds, F)
#--- RECOMBINATION (step #3.B) ----------------+
v_trial = crossover(v_donor, x_t, CR)
#--- GREEDY SELECTION (step #3.C) -------------+
selection(population, j, benchmark.eval, Individual(v_trial))
#--- SCORE KEEPING --------------------------------+
# gen_avg = sum(gen_scores) / pop_size # current generation avg. fitness
# gen_best = min(gen_scores) # fitness of best individual
# gen_sol = population.get(gen_scores.index(min(gen_scores))) # solution of best individual
gen_best = population.get_best()
if benchmark.numFE % 10000 == 0:
print('numFE:', benchmark.numFE)
# print(' > GENERATION AVERAGE:', gen_avg)
# print(' > GENERATION BEST:', gen_best)
# print(' > BEST SOLUTION:', gen_sol)
print('----------------------------------------------')
print(' > GENERATION BEST:', gen_best.score)
print('----------------------------------------------')
if benchmark.is_solution(gen_best):
print('Find a solution! numFE:{0}'.format(benchmark.numFE))
break
return population
def crossover(self, dna1: Individual, dna2: Individual) -> Individual:
'''
O crossover baseado em ordem utiliza uma máscara de bits gerada aleatoriamente.\n
Os genes do dna1 são copiados para o filho referentes às posições onde a
máscara de bits é igual a 1.
Uma sublista é criada para mapear os genes do dna1 onde a máscara é igual a 0.
Essa sublista é ordenada de acordo com a ordem que aparece no dna1.\n
Os genes dessa sublista são colocados nos espaços vazios do filho formando um
novo cromossomo.
'''
if (random() > self.crossover_rate): return dna1
dna1, dna2 = dna1.chromosome, dna2.chromosome
mask = random_bits(len(dna1))
child = [
gene if (bit == 1) else None for (gene, bit) in zip(dna1, mask)
]
sub_list = [num for num in dna2 if (num not in child)]
sub_list.reverse()
for i in range(len(child)):
if (child[i] == None): child[i] = sub_list.pop()
return Individual(child)
def __init__(self,
alpha=0.001,
gamma=0.993,
traj=10,
batch=16,
env_id='Tennis-ramNoFrameskip-v4',
plot_freq=100):
self.alpha = alpha
self.gamma = gamma
self.traj = traj
self.batch = batch
self.plot_freq = plot_freq
self.N_ENVS = 10
self.util = name2class[env_id]
self.envs = [gym.make(self.util.name) for _ in range(self.N_ENVS)]
self.observations = [None] * self.N_ENVS
self.state_shape = (self.util.full_state_dim, )
self.action_dim = self.util.action_space_dim
self.player = Individual(self.state_shape, self.action_dim, 3, 0.01,
alpha, gamma, 0.0005, 1, traj, batch, 1)
self.trajectory = {
'state': np.zeros((batch, traj) + self.state_shape,
dtype=np.float32),
'action': np.zeros((batch, traj), dtype=np.int32),
'rew': np.zeros((batch, traj), dtype=np.float32),
'base_rew': np.zeros((batch, traj), dtype=np.float32),
}
self.last_obs = None
self.plot_max = 50000
self.reward = np.full((self.plot_max, 2), np.nan)
self.range = np.arange(self.plot_max)
self.plot_index = 0
def bnde_run(benchmark, bounds, pop_size, neighborhoodSize, maxFE, d0=1.0E-16):
#--- INITIALIZE A POPULATION (step #1) ----------------+
archive = [] # a archive to store all the local best
population = init_population(pop_size, bounds)
# print(str(population))
best = init_eval(population, benchmark.eval)
# print(str(population))
neighbors = MultiPopulationsWithSameSize(pop_size, neighborhoodSize,
population)
# print(str(neighbors))
mu_pe = 0.5
mu_cr = 0.5
#--- SOLVE --------------------------------------------+
# cycle through each generation (step #2)
while benchmark.numFE < maxFE:
# best = init_eval(population, benchmark.eval)
pe, mu_pe = update_pe(neighbors.size, neighborhoodSize, mu_pe, q=0.1)
cr, mu_cr = update_cr_bnde(neighbors.size,
neighborhoodSize,
mu_cr,
q=0.1)
diversity_preserving(neighbors, archive, bounds, benchmark.eval, d0=d0)
chi = np.exp(-4.0 * (benchmark.numFE / maxFE + 0.4))
# cycle through each individual in the population
best_scores = []
for i in range(neighbors.size):
sub_pop_i = neighbors.get_subpopulation(i)
best_i, worst_i = sub_pop_i.get_best_worst(redo=True)
best_scores.append(benchmark.error(best_i))
# print(best_i)
for j in range(sub_pop_i.size):
x_t = sub_pop_i.get(j).vector
#--- MUTATION (step #3.A) ---------------------+
v_donor = gaussian_mutation_lv_bnde(sub_pop_i.best_index, j,
sub_pop_i, bounds,
pe[i][j], chi)
# print("v_donor", v_donor)
# if mutation_strategy[j] == 0:
# v_donor = gaussian_mutation(best, population.get(j), bounds)
# else:
# v_donor = de_best_1_mutation(best, population, j, bounds, F)
#--- RECOMBINATION (step #3.B) ----------------+
v_trial = crossover(v_donor, x_t, cr[i][j])
# print("v_trial", v_trial)
#--- GREEDY SELECTION (step #3.C) -------------+
score_trial, score_target = selection(sub_pop_i, j,
benchmark.eval,
Individual(v_trial))
# print("numFE:", benchmark.numFE)
#--- SCORE KEEPING --------------------------------+
# gen_avg = sum(gen_scores) / pop_size # current generation avg. fitness
# gen_best = min(gen_scores) # fitness of best individual
# gen_sol = population.get(gen_scores.index(min(gen_scores))) # solution of best individual
# print("benchmark.numFE")
print(str(benchmark.numFE) + "\r", end="")
if benchmark.numFE % 10000 == 0:
print('numFE:', benchmark.numFE)
# print(' > GENERATION AVERAGE:', gen_avg)
# print(' > GENERATION BEST:', gen_best)
# print(' > BEST SOLUTION:', gen_sol)
print('----------------------------------------------')
# print(' > GENERATION AVG BEST:', np.mean(best_scores))
# print(' > GENERATION STD BEST:', np.std(best_scores))
print(' > GENERATION BEST of BEST:', np.min(best_scores))
# print(' > GENERATION WORST of BEST:', np.max(best_scores))
# historical solutions in archive
if len(archive) > 0:
print(' > HISTORICAL BEST of BEST:',
np.min([ind.score for ind in archive]))
print('----------------------------------------------')
print('----------------------------------------------')
for solution in archive:
print(' > SOL in archive:', solution)
print('----------------------------------------------')
print(neighbors)
return neighbors