return self._par
def get_hms(self):
return self._hms
def get_mpai(self):
return self._mpai
def get_mpap(self):
return self._mpap
def maximize(self):
return self._maximize
if __name__ == '__main__':
obj_fun = ObjectiveFunction()
num_processes = cpu_count() # use number of logical CPUs
num_iterations = num_processes * 5 # each process does 5 iterations
results = harmony_search(obj_fun, num_processes, num_iterations)
print('Elapsed time: {}\nBest harmony: {}\nBest fitness: {}'.format(
results.elapsed_time, results.best_harmony, results.best_fitness))
# training & validation
best_training(results.best_harmony, EMBED)
# prediction
prediction(results.best_harmony, EMBED)
help="Usage mode: (training, prediction, test_model(folder))")
parser.add_argument("-use_gpu",
metavar="G",
type=int,
default=-1,
help="Manually assign a gpu number")
args = parser.parse_args()
mode = args.mode
use_gpu = args.use_gpu
# load settings
settings = {}
path = "./meta_data.json"
with open(path) as file:
settings = json.loads(file.read())
#TODO print stats
# maybe print link to Tensorboard?
print("Check out TensorBoard: https://localhost:6006")
#TODO set gpu
torch.cuda.init()
torch.cuda.set_device(0)
if mode == "train":
training.testfold_training(settings)
elif mode == "predict":
prediction.prediction(settings)
#TODO train, test, predict
'ependymoma', 'greymatter', 'glioblastoma', 'lowgradeglioma', 'lymphoma',
'medulloblastoma', 'meningioma', 'metastasis', 'nondiagnostic',
'pilocyticastrocytoma', 'pituitaryadenoma', 'pseudoprogression',
'schwannoma', 'whitematter'
]
if __name__ == "__main__":
# load a trained SRH model
deepSRHmodel = load_model(args.model)
# import SRH mosaic
specimen = import_srh_dicom(args.strip_directory)
print("SRH mosaic size is: " + str(specimen.shape))
# generate preprocessed image patches
patches = patch_generator(specimen, step_size=100, old_preprocess=True)
del specimen
# predict on patches
specimen_prediction = prediction(
feedforward(patch_dict=patches, model=deepSRHmodel))
# print diagnosis
print("SRH specimen diagnosis is: " +
CLASS_NAMES[np.argmax(specimen_prediction)] + " (probability = " +
str(np.max(specimen_prediction)) + ")")
# display probability histogram
plot_srh_probability_histogram(specimen_prediction)
from flask import Flask, render_template, json, request
from flask import jsonify
import nltk
from prediction.prediction import prediction
obj = prediction()
app = Flask(__name__)
pos = 0
neg = 0
@app.route('/predict', methods=['POST'])
def predict():
text = request.json['feedback']
global pos, neg
result = obj.predict([text])
print(result)
word_freqs, max_freq = obj.word_cloud()
response = {}
response["word_freqs"] = str(word_freqs)
response["max_freq"] = max_freq
response["result"] = str(result)
response["pos"] = pos
response["neg"] = neg
return jsonify(response)
rand = Random()
rand.seed(int(time.time()))
es = ec.GA(rand)
es.terminator = terminators.evaluation_termination
es.observer = inspyred.ec.observers.stats_observer
final_pop = es.evolve(generator=generate_design_variable,
evaluator=evaluate_optimization,
maximize=False,
pop_size=100,
bounder=inspyred.ec.Bounder([-100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0, -100.0],
[100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0, 100.0]),
max_evaluations=10000,
num_elites=1,
num_inputs=1)
if __name__ == '__main__':
start_time = time.time()
optimize_core()
elapsed_time = time.time() - start_time
print('Elapsed time: {}\nBest gene: {}\nBest fitness: {}'.format(elapsed_time, BEST_GENE, BEST_FITNESS))
# training & validation
best_training(BEST_GENE, EMBED)
# prediction
prediction(BEST_GENE, EMBED)
ub = [100, 100, 100, 100, 100, 100, 100, 100, 100, 100, 100, 100, 100]
start_time = time.time()
xopt, fopt = pso(func,
lb,
ub,
ieqcons=[],
f_ieqcons=None,
args=(),
kwargs={},
swarmsize=100,
omega=0.5,
phip=0.5,
phig=0.5,
maxiter=50000,
minstep=1e-8,
minfunc=1e-8,
debug=False)
elapsed_time = time.time() - start_time
print('Elapsed time: {}\nBest swarm: {}\nBest fitness: {}'.format(
elapsed_time, xopt, fopt))
# training & validation
best_training(xopt, EMBED)
# prediction
prediction(xopt, EMBED)
