root = bg.SimpleDirDialog(prompt='Choose FDG data dir',
indir='/home/jagust')
cleantime = asctime().replace(' ', '-').replace(':', '-')
logfile = os.path.join(root, 'logs', '%s_%s.log' % (__file__, cleantime))
log_settings = pp.get_logging_configdict(logfile)
logging.config.dictConfig(log_settings)
tracer = 'FDG'
user = os.environ['USER']
logging.info('###START %s %s :::' % (tracer, __file__))
logging.info('###TRACER %s :::' % (tracer))
logging.info('###USER : %s' % (user))
subs = bg.MyDirsDialog(prompt='Choose Subjects ', indir='%s/' % root)
roid = pp.roilabels_fromcsv(roifile)
alld = {}
for sub in subs:
if 'v2' in sub:
logging.info('Skipping visit 2 %s' % (sub))
continue
_, fullsubid = os.path.split(sub)
try:
m = pp.re.search('B[0-9]{2}-[0-9]{3}_v[0-9]', fullsubid)
subid = m.group()
except:
logging.error('no visit marker in %s' % fullsubid)
try:
m = pp.re.search('B[0-9]{2}-[0-9]{3}', fullsubid)
subid = m.group()
cleantime = asctime().replace(' ','-').replace(':', '-')
logfile = os.path.join(root,'logs',
'%s_%s.log'%(__file__, cleantime))
log_settings = pp.get_logging_configdict(logfile)
logging.config.dictConfig(log_settings)
tracer = 'PIB'
user = os.environ['USER']
logging.info('###START %s %s :::'%(tracer, __file__))
logging.info('###TRACER %s :::'%(tracer))
logging.info('###USER : %s'%(user))
subs = bg.MyDirsDialog(prompt='Choose Subjects ',
indir='%s/'%root)
roid = pp.roilabels_fromcsv(roifile)
alld = {}
for sub in subs:
if 'v2' in sub:
logging.info('Skipping visit 2 %s'%(sub))
continue
_, fullsubid = os.path.split(sub)
try:
m = pp.re.search('B[0-9]{2}-[0-9]{3}_v[0-9]',fullsubid)
subid = m.group()
except:
logging.error('cant find ID in %s'%fullsubid)
continue
logging.info('%s'%subid)
pth = os.path.join(sub, tracer.lower())
dvrdir = os.path.join(pth, 'dvr')