class ModelTest(TestCase):
def setUp(self):
self.volume = 1e-18
self.model = Model()
self.function_maker = FunctionMaker()
def test_basic(self):
S1 = self.model.new_species_type(name='S1')
S2 = self.model.new_species_type(name='S2')
P = self.model.new_species_type(name='P')
# S1 + S2 -> P k=.3
self.model.network_rules.add([S1, S2], [P], k=.3)
# P -> S1 + S2 k=.1 (inverse reaction)
self.model.network_rules.add([P], [S1, S2], k=.1)
# Make Function list
functions = self.function_maker.make_functions(self.model, self.volume)
species = list(self.model.network_rules.all_species())
self.assertEqual(len(functions), len(species))
def make_functions(self, model, volume):
'''Make functions from model
'''
function_maker = FunctionMaker()
return function_maker.make_functions(model, volume)