def test_generic_random_transformation():
r"""Test generic Procrustes with randomized transformation matrices."""
# define arbitrary array and random transformation
np.random.seed(999)
array_a = np.random.randint(low=-10, high=10, size=(5, 4))
array_x = np.random.randint(low=0, high=20, size=(4, 4)) / 10
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=False)
# check transformation is right & error is zero
assert_almost_equal(res["array_u"], array_x, decimal=6)
assert_almost_equal(res["error"], 0.0, decimal=6)
def test_generic_square(m):
r"""Test generic Procrustes with random square matrices."""
# random input & transformation arrays (size=mxm)
array_a = np.random.uniform(-2.0, 2.0, (m, m))
array_x = np.random.uniform(-2.0, 2.0, (m, m))
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=False)
# check error & arrays
assert_almost_equal(res.error, 0.0, decimal=6)
assert_almost_equal(res.t, array_x, decimal=6)
assert_almost_equal(res.new_a, array_a, decimal=6)
assert_almost_equal(res.new_b, array_b, decimal=6)
def test_generic_transformed_translate_scale():
r"""Test generic Procrustes with translation and scaling."""
# define arbitrary array and random transformation
np.random.seed(999)
array_a = np.random.randint(low=-10, high=10, size=(5, 4))
array_x = np.array([[0.3, 0., 0.3, 0.6],
[0.7, 0.3, 0., 0.8],
[0.4, 0., 0.4, 0.5],
[0.3, 0.7, 0.1, 0.7]])
array_b = np.dot(4.5 * (array_a + 9), array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=True, scale=True)
# check transformation is error is zero
assert_almost_equal(res["error"], 0.0, decimal=6)
def test_generic_rectangular(m, n):
r"""Test generic Procrustes with random rectangular matrices."""
# random input & transformation arrays (size=mxn)
array_a = np.random.uniform(-2.0, 2.0, (m, n))
array_x = np.random.uniform(-3.0, 3.0, (n, n))
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=False)
# check error & arrays
assert_almost_equal(res.error, 0.0, decimal=6)
assert_almost_equal(res.new_a, array_a, decimal=6)
assert_almost_equal(res.new_b, array_b, decimal=6)
# check transformation array, only if it is unique
if m >= n:
assert_almost_equal(res.t, array_x, decimal=6)
def test_generic_transformed_negative():
r"""Test generic Procrustes with negative matrices."""
# define arbitrary array and random transformation
np.random.seed(999)
array_a = np.random.randint(low=-10, high=10, size=(5, 4))
array_x = np.array([[0.3, 0., 0.3, 0.6],
[0.7, 0.3, 0., 0.8],
[0.4, 0., 0.4, 0.5],
[0.3, 0.7, 0.1, 0.7]])
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=False)
# check transformation is right & error is zero
assert_almost_equal(res["array_u"], array_x, decimal=6)
assert_almost_equal(res["error"], 0.0, decimal=6)
def test_generic_square_lapack_driver_and_assertion_error(m):
r"""Test generic Procrustes with random and non-default lapack driver with assertion error."""
# random input & transformation arrays (size=mxm)
array_a = np.random.uniform(-2.0, 2.0, (m, m))
array_x = np.random.uniform(-2.0, 2.0, (m, m))
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=False, use_svd=True)
# check error & arrays
assert_almost_equal(res.error, 0.0, decimal=6)
assert_almost_equal(res.t, array_x, decimal=6)
assert_almost_equal(res.new_a, array_a, decimal=6)
assert_almost_equal(res.new_b, array_b, decimal=6)
# Check assertion error
assert_raises(TypeError, generic, array_a, array_b, use_svd="not bool")
def test_generic_rectangular_translate(m, n):
r"""Test generic Procrustes with random rectangular matrices & translation."""
# random input, transformation arrays, & translation (size=mxn)
array_a = np.random.uniform(-4.0, 4.0, (m, n))
array_x = np.random.uniform(-2.0, 2.0, (n, n))
array_t = np.repeat(np.random.uniform(-3.0, 3.0, (1, n)), m, axis=0)
array_b = np.dot(array_a, array_x) + array_t
# compute procrustes transformation
res = generic(array_a, array_b, translate=True, scale=False)
# check error & arrays
assert_almost_equal(res.error, 0.0, decimal=6)
assert_almost_equal(res.new_a,
array_a - np.mean(array_a, axis=0),
decimal=6)
assert_almost_equal(res.new_b,
array_b - np.mean(array_b, axis=0),
decimal=6)
def test_generic_rectangular_scale(m, n):
r"""Test generic Procrustes with random square matrices & translation."""
# random input, transformation arrays, & translation (size=mxn)
array_a = np.random.uniform(-5.0, 5.0, (m, n))
array_x = np.random.uniform(-3.0, 3.0, (n, n))
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=True)
# check error & arrays
assert_almost_equal(res.error, 0.0, decimal=6)
norm_a = np.linalg.norm(array_a)
norm_b = np.linalg.norm(array_b)
assert_almost_equal(res.new_a, array_a / norm_a, decimal=6)
assert_almost_equal(res.new_b, array_b / norm_b, decimal=6)
# check transformation array, only if it is unique
if m >= n:
assert_almost_equal(res.t, array_x * norm_a / norm_b, decimal=6)
def test_generic_rectangular_translate_scale(m, n):
r"""Test generic Procrustes with random square matrices & translation."""
# random input, transformation arrays, & translation (size=mxn)
array_a = np.random.uniform(-10.0, 10.0, (m, n))
array_x = np.random.uniform(-7.0, 7.0, (n, n))
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=True, scale=True)
# check error & arrays
assert_almost_equal(res.error, 0.0, decimal=6)
centered_a = array_a - np.mean(array_a, axis=0)
centered_b = array_b - np.mean(array_b, axis=0)
assert_almost_equal(res.new_a,
centered_a / np.linalg.norm(centered_a),
decimal=6)
assert_almost_equal(res.new_b,
centered_b / np.linalg.norm(centered_b),
decimal=6)
def test_generic_transformed():
r"""Test generic Procrustes with random matrices."""
# define arbitrary array and random transformation
array_a = np.array([[3, 3, 5, 9],
[2, 6, 9, 9],
[1, 3, 5, 2],
[0, 4, 2, 9],
[9, 6, 0, 3]])
array_x = np.array([[0.3, 0., 0.3, 0.6],
[0.7, 0.3, 0., 0.8],
[0.4, 0., 0.4, 0.5],
[0.3, 0.7, 0.1, 0.7]])
array_b = np.dot(array_a, array_x)
# compute procrustes transformation
res = generic(array_a, array_b, translate=False, scale=False)
# check transformation is right & error is zero
assert_almost_equal(res["array_u"], array_x, decimal=6)
assert_almost_equal(res["error"], 0.0, decimal=6)