def populate_annos():
from protcur import document as ptcdoc
from protcur.core import annoSync
from protcur.analysis import Hybrid, protc
from hyputils.hypothesis import HypothesisHelper, group_to_memfile
from hyputils import hypothesis as hyp
ProtcurData.protc = protc
group = auth.get('hypothesis-group')
get_annos, annos, stream_thread, exit_loop = annoSync(
group_to_memfile(group + 'sparcur'),
helpers=(HypothesisHelper, Hybrid, protc),
group=group,
sync=False)
# FIXME hack to workaround bad api key init for hyutils until we can integrate orthauth
get_annos.api_token = auth.get('hypothesis-api-key')
annos.clear()
annos.extend([ptcdoc.Annotation(a) for a in get_annos()])
# reset classes in case some other class has populated them
# (e.g. during testing) FIXME this is a bad hack
protc.reset()
Hybrid.reset()
# FIXME this is expensive and slow to continually recompute
[protc(a, annos) for a in annos]
[Hybrid(a, annos) for a in annos]
def populate_annos(group_name='sparc-curation'):
from hyputils import hypothesis as hyp
if hyp.api_token == 'TOKEN': # FIXME does not work
hyp.api_token = auth.get('hypothesis-api-key')
group = auth.get('hypothesis-group')
get_annos, annos, stream_thread, exit_loop = annoSync(group_to_memfile(group + 'sparcur'),
helpers=(HypothesisHelper, Hybrid, protc),
group=group,
sync=False)
[protc(a, annos) for a in annos]
[Hybrid(a, annos) for a in annos]
def populate_annos(group_name='sparc-curation'):
from hyputils import hypothesis as hyp
if hyp.api_token == 'TOKEN': # FIXME does not work
hyp.api_token = devconfig.secrets('hypothesis', 'api',
devconfig.hypothesis_api_user)
group = devconfig.secrets('hypothesis', 'group', group_name)
get_annos, annos, stream_thread, exit_loop = annoSync(
group_to_memfile(group + 'sparcur'),
helpers=(HypothesisHelper, Hybrid, protc),
group=group,
sync=False)
[protc(a, annos) for a in annos]
[Hybrid(a, annos) for a in annos]
def populate_annos():
from protcur.core import annoSync
from protcur.analysis import Hybrid, protc
from hyputils.hypothesis import HypothesisHelper, group_to_memfile
from hyputils import hypothesis as hyp
ProtcurData.protc = protc
group = auth.get('hypothesis-group')
get_annos, annos, stream_thread, exit_loop = annoSync(
group_to_memfile(group + 'sparcur'),
helpers=(HypothesisHelper, Hybrid, protc),
group=group,
sync=False)
# FIXME hack to workaround bad api key init for hyutils until we can integrate orthauth
get_annos.api_token = auth.get('hypothesis-api-key')
annos.clear()
annos.extend(get_annos())
# FIXME this is expensive and slow to continually recompute
[protc(a, annos) for a in annos]
[Hybrid(a, annos) for a in annos]
def populate_annos():
from protcur import document as ptcdoc
from protcur.core import annoSync
from protcur.analysis import Hybrid, protc
from hyputils.hypothesis import HypothesisHelper, group_to_memfile, AnnoReader
from hyputils import hypothesis as hyp
ProtcurData.protc = protc
group = auth.get('hypothesis-group')
memfile = group_to_memfile(group + 'sparcur')
#ar = AnnoReader(memfile, group)
#annos = ar.get_annos()
#ud = [a.updated for a in annos]
#lud_before = max(ud) if ud else None
#del ud
get_annos, annos, stream_thread, exit_loop = annoSync(
memfile,
helpers=(HypothesisHelper, Hybrid, protc),
group=group,
sync=False)
# FIXME hack to workaround bad api key init for hyutils until we can integrate orthauth
get_annos.api_token = auth.get('hypothesis-api-key')
annos.clear()
annos.extend([ptcdoc.Annotation(a) for a in get_annos()])
#lud_after = max([a.updated for a in annos])
# reset classes in case some other class has populated them
# (e.g. during testing) FIXME this is a bad hack
protc.reset()
Hybrid.reset()
#if lud_before == lud_after: # no new annos
# yeah we can use pickled ... but how :/
#return ???
# FIXME this is expensive and slow to continually recompute
[protc(a, annos) for a in annos]
[Hybrid(a, annos) for a in annos]