def test_kegg_parse_with_count_expression(self):
r = kegg.parse_reaction('2n C00404 + n C00001 <=> (n+1) C02174')
self.assertEqual(
r,
Reaction(Reaction.Bidir, [(Compound('C00404'), Expression('2n')),
(Compound('C00001'), Expression('n'))],
[(Compound('C02174'), Expression('n+1'))]))
def test_kegg_parse(self):
r = kegg.parse_reaction('C00013 + C00001 <=> 2 C00009')
self.assertEqual(
r,
Reaction(Reaction.Bidir, [(Compound('C00013'), 1),
(Compound('C00001'), 1)],
[(Compound('C00009'), 2)]))
def test_kegg_parse_with_count_expression(self):
r = kegg.parse_reaction('2n C00404 + n C00001 <=> (n+1) C02174')
self.assertEqual(
r, Reaction(Direction.Both,
[(Compound('C00404'), Expression('2n')),
(Compound('C00001'), Expression('n'))],
[(Compound('C02174'), Expression('n+1'))]))
def test_kegg_parse_with_compound_argument(self):
r = kegg.parse_reaction('C00039(n) <=> C00013 + C00039(n+1)')
self.assertEqual(
r,
Reaction(Reaction.Bidir,
[(Compound('C00039', arguments=[Expression('n')]), 1)],
[(Compound('C00013'), 1),
(Compound('C00039', arguments=[Expression('n+1')]), 1)]))
def test_kegg_parse_with_compound_argument(self):
r = kegg.parse_reaction('C00039(n) <=> C00013 + C00039(n+1)')
self.assertEqual(
r, Reaction(Direction.Both,
[(Compound('C00039', arguments=[Expression('n')]), 1)],
[(Compound('C00013'), 1),
(Compound('C00039',
arguments=[Expression('n+1')]), 1)]))
def test_kegg_parse(self):
r = kegg.parse_reaction('C00013 + C00001 <=> 2 C00009')
self.assertEquals(r, Reaction(Reaction.Bidir, [(Compound('C00013'), 1), (Compound('C00001'), 1)],
[(Compound('C00009'), 2)]))
