def test_fastcore_induced_model_high_epsilon(self):
core = {'rxn_2'}
self.assertEqual(
set(
fastcore.fastcore(self.model,
core,
0.1,
scaling=1e7,
solver=self.solver)), {'rxn_1', 'rxn_2'})
def test_fastcore_induced_model(self):
core = {'rxn_2', 'rxn_3'}
self.assertEqual(set(
fastcore.fastcore(self.model, core, 0.001, solver=self.solver)),
{'rxn_1', 'rxn_2', 'rxn_3', 'rxn_4'})
def test_fastcore_induced_model_high_epsilon(self):
core = {'rxn_2'}
self.assertEqual(
set(fastcore.fastcore(
self.model, core, 0.1, scaling=1e7, solver=self.solver)),
{'rxn_1', 'rxn_2'})
def test_fastcore_global_inconsistent(self):
self.database.set_reaction('rxn_7', parse_reaction('|E| <=>'))
self.model.add_reaction('rxn_7')
with self.assertRaises(fastcore.FastcoreError):
fastcore.fastcore(self.model, {'rxn_7'}, 0.001,
solver=self.solver)
def test_fastcore_induced_model(self):
core = {"rxn_2", "rxn_3"}
self.assertEquals(
set(fastcore.fastcore(self.model, core, 0.001, solver=self.solver)), {"rxn_1", "rxn_2", "rxn_3", "rxn_4"}
)
def test_fastcore_induced_model_high_epsilon(self):
core = {"rxn_2"}
self.assertEquals(set(fastcore.fastcore(self.model, core, 0.1, solver=self.solver)), {"rxn_1", "rxn_2"})