def test_run_fit():
pso_parameter_file_in = '/home/mrama/Dropbox/Kinetics/Enzymes_new/G6PDH2r_dKd/Parameter_Fitting/Development/psoParameters.txt'
lma_parameter_file_in = '/home/mrama/Dropbox/Kinetics/Enzymes_new/G6PDH2r_dKd/Parameter_Fitting/Development/lmlaParameters.txt'
## File Pathways for Recording Information
pso_summary_file_name = '/home/mrama/Dropbox/Kinetics/Enzymes_new/G6PDH2r_dKd/Parameter_Fitting/Development/psoSummary.txt'
pso_ultimate_result_file_name = '/home/mrama/Dropbox/Kinetics/Enzymes_new/G6PDH2r_dKd/Parameter_Fitting/Development/psoResults.txt'
lma_candidates_import_path = pso_ultimate_result_file_name
lma_candidates_export_path = '/home/mrama/Dropbox/Kinetics/Enzymes_new/G6PDH2r_dKd/Parameter_Fitting/Development/lmaResults.txt'
pso_num_trials = 1 # Final candidate values
data_file_name = '/home/mrama/Dropbox/Kinetics/Enzymes_new/G6PDH2r_dKd/Parameter_Fitting/Development/G6PDH2r.dat' # path to file with the data to be fit
# run pso
pso_parameters = _parse_function_parameters(pso_parameter_file_in)
pso_num_trials = 1
for i in range(pso_num_trials):
run_pso(pso_parameters, data_file_name, pso_summary_file_name,
pso_ultimate_result_file_name)
return parameter
if __name__ == '__main__':
pso_parameter_file_in = sys.argv[1] # parameter file for pso
lma_parameter_file_in = sys.argv[2] # parameter file for lma
## File Pathways for Recording Information
pso_summary_file_name = sys.argv[3] # summary of each pso trial
pso_ultimate_result_file_name = sys.argv[
4] # final pso candidate values, same as initial candidates for lma
lma_candidates_import_path = pso_ultimate_result_file_name
lma_candidates_export_path = sys.argv[5]
pso_num_trials = int(sys.argv[6]) # Final candidate values
# data_file_name = sys.argv[7] # path to file with the data to be fit
for data_file_name in sys.argv[7:]:
# run pso
pso_parameters = _parse_pso_parameters(pso_parameter_file_in)
for i in range(pso_num_trials):
run_pso(pso_parameters, data_file_name, pso_summary_file_name,
pso_ultimate_result_file_name)
# run lma
lma_parameters = _parse_pso_parameters(lma_parameter_file_in)
run_lma(lma_parameters, data_file_name, lma_candidates_import_path,
lma_candidates_export_path)