def test_organizeterms_manyannots_and_headers(self):
annot1 = self.createAnnot(10, 'term10')
annot2 = self.createAnnot(20, 'term20')
header1 = 'Test Header1'
header2 = 'Test Header2'
headerMap = {1: {10: [header1], 20: [header2]}}
sortedHeadersMap = {1: [header1, header2]}
g1 = self.createGeno(1)
g1.mp_annots = [annot1, annot2]
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap,
sortedHeadersMap)
# three headers should be created, all with annot1
# in order of 2, 3, 1
expected1 = self.createGeno(1)
expected1.mp_headers = [{
'term': header1,
'annots': [annot1]
}, {
'term': header2,
'annots': [annot2]
}]
self.assertMpHeaders([expected1], genotypes)
def test_organizeterms_empty(self):
headerMap = {}
sortedHeadersMap = {}
genotypes = []
genotype_mp_hunter._organizeTerms(genotypes, headerMap,
sortedHeadersMap)
self.assertMpHeaders([], genotypes)
def test_organizeterms_noheaders(self):
headerMap = {}
sortedHeadersMap = {}
g1 = self.createGeno(1)
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap, sortedHeadersMap)
# nothing should happen to g1
self.assertMpHeaders([self.createGeno(1)], genotypes)
def test_organizeterms_noheaders(self):
headerMap = {}
sortedHeadersMap = {}
g1 = self.createGeno(1)
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap,
sortedHeadersMap)
# nothing should happen to g1
self.assertMpHeaders([self.createGeno(1)], genotypes)
def test_organizeterms_headerannot(self):
header1 = 'Test Header1'
annot1 = self.createAnnot(10, header1)
headerMap = {}
sortedHeadersMap = {1: [header1]}
g1 = self.createGeno(1)
g1.mp_annots = [annot1]
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap, sortedHeadersMap)
# three headers should be created, all with annot1
# in order of 2, 3, 1
expected1 = self.createGeno(1)
expected1.mp_headers = [{'term': header1, 'annots':[annot1]}]
self.assertMpHeaders([expected1], genotypes)
def test_organizeterms_simple_oneheader(self):
annot1 = self.createAnnot(10, 'term10')
header1 = 'Test Header'
headerMap = {1: {10: [header1]}}
sortedHeadersMap = {1: [header1]}
g1 = self.createGeno(1)
g1.mp_annots = [annot1]
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap, sortedHeadersMap)
# single header should be created with annot1
expected1 = self.createGeno(1)
expected1.mp_headers = [{'term': header1, 'annots':[annot1]}]
self.assertMpHeaders([expected1], genotypes)
def test_organizeterms_simple_oneheader(self):
annot1 = self.createAnnot(10, 'term10')
header1 = 'Test Header'
headerMap = {1: {10: [header1]}}
sortedHeadersMap = {1: [header1]}
g1 = self.createGeno(1)
g1.mp_annots = [annot1]
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap,
sortedHeadersMap)
# single header should be created with annot1
expected1 = self.createGeno(1)
expected1.mp_headers = [{'term': header1, 'annots': [annot1]}]
self.assertMpHeaders([expected1], genotypes)
def test_organizeterms_headerannot(self):
header1 = 'Test Header1'
annot1 = self.createAnnot(10, header1)
headerMap = {}
sortedHeadersMap = {1: [header1]}
g1 = self.createGeno(1)
g1.mp_annots = [annot1]
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap,
sortedHeadersMap)
# three headers should be created, all with annot1
# in order of 2, 3, 1
expected1 = self.createGeno(1)
expected1.mp_headers = [{'term': header1, 'annots': [annot1]}]
self.assertMpHeaders([expected1], genotypes)
def test_organizeterms_manyannots_and_headers(self):
annot1 = self.createAnnot(10, 'term10')
annot2 = self.createAnnot(20, 'term20')
header1 = 'Test Header1'
header2 = 'Test Header2'
headerMap = {1: {10: [header1], 20: [header2]}}
sortedHeadersMap = {1: [header1, header2]}
g1 = self.createGeno(1)
g1.mp_annots = [annot1, annot2]
genotypes = [g1]
genotype_mp_hunter._organizeTerms(genotypes, headerMap, sortedHeadersMap)
# three headers should be created, all with annot1
# in order of 2, 3, 1
expected1 = self.createGeno(1)
expected1.mp_headers = [{'term': header1, 'annots':[annot1]},
{'term': header2, 'annots':[annot2]}]
self.assertMpHeaders([expected1], genotypes)
def test_organizeterms_empty(self):
headerMap = {}
sortedHeadersMap = {}
genotypes = []
genotype_mp_hunter._organizeTerms(genotypes, headerMap, sortedHeadersMap)
self.assertMpHeaders([], genotypes)
