def translators24_initiateWith_25markerset(cls):
contents24 = """
Translators:
LASI: None
RASI: None
LPSI: None
RPSI: None
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: None
LKNE: None
LTHAP: None
LTHAD: None
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: T2
T10: None
CLAV: None
STRN: CLAV
LFHD: GLAB
LBHD: LMAS
RFHD: GLAB
RBHD: RMAS
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.openYaml(None, None, contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "operations\\Translators\\cgm2.5\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2,
"translators24_initiateWith_25markerset.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint("C7").GetValues(),
acqStatic.GetPoint("T2").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("LFHD").GetValues(),
acqStatic.GetPoint("GLAB").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("RFHD").GetValues(),
acqStatic.GetPoint("GLAB").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("LBHD").GetValues(),
acqStatic.GetPoint("LMAS").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("RBHD").GetValues(),
acqStatic.GetPoint("RMAS").GetValues())
def scenario4Test(cls):
"""
you want to swp to markers
( e.g : LTHI swap with LTHAD)
return:
in the final c3d, both markers are swapped. there are no _origin markers
"""
contents24 = """
Translators:
LASI: None
RASI: None
LPSI: None
RPSI: None
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: LTHAD
LKNE: None
LTHAP: None
LTHAD: LTHI
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: None
T10: None
CLAV: None
STRN: None
LFHD: None
LBHD: None
RFHD: None
RBHD: None
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.openYaml(None, None, contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "operations\\Translators\\scenario4\\"
staticFilename = "staticAlana.c3d"
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2, "scenario4Test.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint("LTHI").GetValues(),
acqStatic.GetPoint("LTHAD").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("LTHAD").GetValues(),
acqStatic.GetPoint("LTHI").GetValues())
def scenario3Test(cls):
"""
the pyCGM2 marker is IN the c3d. it points to another pyCGM2 marker which is IN c3d
( e.g : LTHI points to LTHAP)
return:
the translator and your own markers point to similar values (e.g LTHI amd LTAP point same values)
a new marker suffixed with _origin for keeping a trace of the translator found in the c3d ( eg LTHi renamed LTHI_origin )
"""
contents24 = """
Translators:
LASI: None
RASI: None
LPSI: None
RPSI: None
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: LTHAD
LKNE: None
LTHAP: None
LTHAD: None
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: None
T10: None
CLAV: None
STRN: None
LFHD: None
LBHD: None
RFHD: None
RBHD: None
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.openYaml(None, None, contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "operations\\Translators\\scenario3\\"
staticFilename = "staticAlana.c3d"
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2, "scenario3Test.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint("LTHI").GetValues(),
acqStatic2.GetPoint("LTHAD").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("LTHI_origin").GetValues(),
acqStatic.GetPoint("LTHI").GetValues())
def scenario1Test(cls):
"""
basic test.
the pyCGM2 marker is not in the c3d. it points to you own label which is not a pyCGM2 marker
( e.g : LASI points to LeftASI)
return:
=> own markers and pyGM2 markers are both IN the final c3d
"""
contents24 = """
Translators:
LASI: LeftASI
RASI: RightASI
LPSI: LeftPSI
RPSI: RightPSI
RTHI: None
RKNE: None
RTIAP: None
RTIAD: None
RTIB: None
RANK: None
RTIAP: None
RTIAD: None
RHEE: None
RSMH: None
RTOE: None
RFMH: None
RVMH: None
LTHI: None
LKNE: None
LTHAP: None
LTHAD: None
LTIB: None
LANK: None
LTIAP: None
LTIAD: None
LHEE: None
LSMH: None
LTOE: None
LFMH: None
LVMH: None
RKNM: None
LKNM: None
RMED: None
LMED: None
C7: None
T10: None
CLAV: None
STRN: None
LFHD: None
LBHD: None
RFHD: None
RBHD: None
LSHO: None
LELB: None
LWRB: None
LWRA: None
LFIN: None
RSHO: None
RELB: None
RWRB: None
RWRA: None
RFIN: None
"""
translators = files.openYaml(None, None, contents24)
MAIN_PATH = pyCGM2.TEST_DATA_PATH + "operations\\Translators\\scenario1\\"
staticFilename = "static.c3d"
acqStatic = btkTools.smartReader(str(MAIN_PATH + staticFilename))
acqStatic2 = btkTools.applyTranslators(acqStatic,
translators["Translators"])
btkTools.smartWriter(acqStatic2, "scenario1Test.c3d")
np.testing.assert_equal(
acqStatic2.GetPoint("LeftASI").GetValues(),
acqStatic2.GetPoint("LASI").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("RightASI").GetValues(),
acqStatic2.GetPoint("RASI").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("LeftPSI").GetValues(),
acqStatic2.GetPoint("LPSI").GetValues())
np.testing.assert_equal(
acqStatic2.GetPoint("RightPSI").GetValues(),
acqStatic2.GetPoint("RPSI").GetValues())
def yamltest(cls):
DATA_PATH = "C:\\Users\\HLS501\\Documents\\Programming\\API\\pyCGM2\\pyCGM2\\SessionSettings\\"
ymlConfigFile = "pipeline_yml.pyCGM2"
struct = files.openYaml(DATA_PATH,ymlConfigFile)