from pyCGM2.Model.CGM2 import cgm
from pyCGM2.Lib.CGM import cgm2_2
from pyCGM2.Utils import files
from pyCGM2.Utils.utils import *
from pyCGM2.qtm import qtmTools
from qtmWebGaitReport import utils
from pyCGM2 import enums
from pyCGM2.Tools import btkTools
from pyCGM2.Lib import eventDetector, analysis, plot
from pyCGM2.Report import normativeDatasets
from pyCGM2.Signal import signal_processing
from pyCGM2.ForcePlates import forceplates
import warnings
warnings.simplefilter(action='ignore', category=FutureWarning)
log.setLogger(level=logging.INFO)
with open('pyCGM2.log', 'w'):
pass
MARKERSETS = {
"Lower limb tracking markers":
cgm.CGM1.LOWERLIMB_TRACKING_MARKERS,
"Thorax tracking markers":
cgm.CGM1.THORAX_TRACKING_MARKERS,
"Upper limb tracking markers":
cgm.CGM1.UPPERLIMB_TRACKING_MARKERS,
"Calibration markers": [
"LKNM", "RKNM", "LMED", "RMED", "LKAX", "LKD1", "LKD2", "RKAX", "RKD1",
"RKD2"
]
}
# -*- coding: utf-8 -*-
#import ipdb
import os
import argparse
import traceback
import logging
import pyCGM2
from pyCGM2.Utils import files
from pyCGM2.Configurator import ModelManager
from pyCGM2.Lib.CGM import cgm1_1
from pyCGM2.Tools import btkTools
from pyCGM2 import log; log.setLogger()
import warnings
warnings.simplefilter(action='ignore', category=FutureWarning)
def main(args):
DATA_PATH = os.getcwd()+"\\"
# User Settings
if os.path.isfile(DATA_PATH + args.userFile):
userSettings = files.openFile(DATA_PATH,args.userFile)
else:
raise Exception ("user setting file not found")
# internal (expert) Settings
if args.expertFile:
if os.path.isfile(DATA_PATH + args.expertFile):
internalSettings = files.openFile(DATA_PATH,args.expertFile)
import os
import pyCGM2
from pyCGM2.Inspect import inspectFilters, inspectProcedures
from pyCGM2.Model.CGM2 import cgm, cgm2
from pyCGM2.Utils import files
from pyCGM2.Utils.utils import *
from pyCGM2.qtm import qtmTools
from qtmWebGaitReport import utils
from pyCGM2.Tools import btkTools
import warnings
warnings.simplefilter(action='ignore', category=FutureWarning)
log.setLogger(filename="inspector.log", level=logging.INFO)
with open('inspector.log', 'w'):
pass
def runAllQualityProcedures(folder, filenames):
for filename in filenames:
logging.info("--------file: [%s] --------" % (filename))
logging.info("---------------------------")
acq = btkTools.smartReader(os.path.join(folder, filename))
all_procedures = [
inspectProcedures.GapQualityProcedure,
inspectProcedures.GaitEventQualityProcedure,
inspectProcedures.SwappingMarkerQualityProcedure,
inspectProcedures.MarkerPresenceQualityProcedure,
# -*- coding: utf-8 -*-
#import ipdb
import os
import argparse
import traceback
import logging
import pyCGM2
from pyCGM2.Utils import files
from pyCGM2.Configurator import ModelManager
from pyCGM2.Lib.CGM import cgm2_5
from pyCGM2.Tools import btkTools
from pyCGM2 import log
log.setLogger()
import warnings
warnings.simplefilter(action='ignore', category=FutureWarning)
def main(args):
DATA_PATH = os.getcwd() + "\\"
# User Settings
if os.path.isfile(DATA_PATH + args.userFile):
userSettings = files.openFile(DATA_PATH, args.userFile)
else:
raise Exception("user setting file not found")
# internal (expert) Settings
if args.expertFile:
if os.path.isfile(DATA_PATH + args.expertFile):
