def test_remove_dependency(self):
"""add and remove jobgroup dependency."""
jg1 = pyani_jobs.JobGroup("1d-sweep", "cat", arguments=self.params1)
jg2 = pyani_jobs.JobGroup("2d-sweep", "myprog", arguments=self.params2)
jg2.add_dependency(jg1)
self.assertEqual(1, len(jg2.dependencies))
dep = jg2.dependencies[0]
self.assertEqual("1d-sweep", dep.name)
jg2.remove_dependency(dep)
self.assertEqual(0, len(jg2.dependencies))
def test_remove_dependency(self):
"""add and remove jobgroup dependency."""
jg1 = pyani_jobs.JobGroup('1d-sweep', 'cat', arguments=self.params1)
jg2 = pyani_jobs.JobGroup('2d-sweep', 'myprog', arguments=self.params2)
jg2.add_dependency(jg1)
assert_equal(1, len(jg2.dependencies))
dep = jg2.dependencies[0]
assert_equal('1d-sweep', dep.name)
jg2.remove_dependency(dep)
assert_equal(0, len(jg2.dependencies))
def test_add_dependency(self):
"""add jobgroup dependency."""
jg1 = pyani_jobs.JobGroup("1d-sweep", "cat", arguments=self.params1)
jg2 = pyani_jobs.JobGroup("2d-sweep", "myprog", arguments=self.params2)
jg2.add_dependency(jg1)
self.assertEqual(4, jg2.tasks)
self.assertEqual(1, len(jg2.dependencies))
dep = jg2.dependencies[0]
self.assertEqual(3, dep.tasks)
self.assertEqual("1d-sweep", dep.name)
def test_add_dependency(self):
"""add jobgroup dependency."""
jg1 = pyani_jobs.JobGroup('1d-sweep', 'cat', arguments=self.params1)
jg2 = pyani_jobs.JobGroup('2d-sweep', 'myprog', arguments=self.params2)
jg2.add_dependency(jg1)
assert_equal(4, jg2.tasks)
assert_equal(1, len(jg2.dependencies))
dep = jg2.dependencies[0]
assert_equal(3, dep.tasks)
assert_equal('1d-sweep', dep.name)
def test_remove_group_dependency(job_scripts):
"""add and remove jobgroup dependency."""
jg1 = pyani_jobs.JobGroup("1d-sweep",
"cat",
arguments=job_scripts[0].params)
jg2 = pyani_jobs.JobGroup("2d-sweep",
"myprog",
arguments=job_scripts[1].params)
jg2.add_dependency(jg1)
dep = jg2.dependencies[0]
jg2.remove_dependency(dep)
assert 0 == len(jg2.dependencies)
def test_1d_jobgroup(self):
"""create dummy 1-parameter sweep jobgroup."""
jobgroup = pyani_jobs.JobGroup("1d-sweep",
"cat",
arguments=self.params1)
self.assertEqual(jobgroup.script, self.p1script)
self.assertEqual(3, jobgroup.tasks)
def test_2d_jobgroup(self):
"""create dummy 2-parameter sweep jobgroup."""
jobgroup = pyani_jobs.JobGroup('2d-sweep',
'myprog',
arguments=self.params2)
assert_equal(jobgroup.script, self.p2script)
assert_equal(4, jobgroup.tasks)
def test_1d_jobgroup(self):
"""create dummy 1-parameter sweep jobgroup."""
jobgroup = pyani_jobs.JobGroup('1d-sweep',
'cat',
arguments=self.params1)
assert_equal(jobgroup.script, self.p1script)
assert_equal(3, jobgroup.tasks)
def test_add_group_dependency(job_scripts):
"""add jobgroup dependency."""
jg1 = pyani_jobs.JobGroup("1d-sweep",
"cat",
arguments=job_scripts[0].params)
jg2 = pyani_jobs.JobGroup("2d-sweep",
"myprog",
arguments=job_scripts[1].params)
jg2.add_dependency(jg1)
dep = jg2.dependencies[0]
assert (1, 3, 4, "1d-sweep") == (
len(jg2.dependencies),
dep.tasks,
jg2.tasks,
dep.name,
)
def test_2d_jobgroup(self):
"""create dummy 2-parameter sweep jobgroup."""
jobgroup = pyani_jobs.JobGroup("2d-sweep",
"myprog",
arguments=self.params2)
print(jobgroup.script)
print(self.p2script)
self.assertEqual(jobgroup.script, self.p2script)
self.assertEqual(4, jobgroup.tasks)
def test_2d_jobgroup(job_scripts):
"""create dummy 2-parameter sweep jobgroup."""
jobgroup = pyani_jobs.JobGroup("2d-sweep",
"myprog",
arguments=job_scripts[1].params)
assert (jobgroup.script, 4) == (job_scripts[1].script, jobgroup.tasks)
def test_1d_jobgroup(job_scripts):
"""create dummy 1-parameter sweep jobgroup."""
jobgroup = pyani_jobs.JobGroup("1d-sweep",
"cat",
arguments=job_scripts[0].params)
assert (jobgroup.script, 3) == (job_scripts[0].script, jobgroup.tasks)
def test_create_jobgroup(job_empty_script):
"""create dummy jobgroup."""
jobgroup = pyani_jobs.JobGroup("empty", "")
assert jobgroup.script == job_empty_script
def test_create_jobgroup(self):
"""create dummy jobgroup."""
jobgroup = pyani_jobs.JobGroup("empty", "")
self.assertEqual(jobgroup.script, self.emptyscript)
def test_create_jobgroup(self):
"""create dummy jobgroup."""
jobgroup = pyani_jobs.JobGroup('empty', '')
assert_equal(jobgroup.script, self.emptyscript)