def test_gene_fusion_missing_implicit(self):
"""Test serialization of a gene fusion to BEL with a implicit missing fusion ranges."""
dsl = GeneFusion(
Gene('HGNC', 'TMPRSS2'),
Gene('HGNC', 'ERG'),
)
self.assertEqual('g(fus(HGNC:TMPRSS2, "?", HGNC:ERG, "?"))', dsl.as_bel())
def test_GeneFusion(self):
"""Test serialization of a gene fusion to BEL with a explicit fusion ranges."""
dsl = GeneFusion(Gene('HGNC', 'TMPRSS2'), Gene('HGNC', 'ERG'),
EnumeratedFusionRange('c', 1, 79),
EnumeratedFusionRange('c', 312, 5034))
self.assertEqual(
'g(fus(HGNC:TMPRSS2, "c.1_79", HGNC:ERG, "c.312_5034"))',
dsl.as_bel())