def test_thorough_json_file(self):
"""Test the round-trip through a node-link JSON file."""
sio = StringIO()
to_json_file(sialic_acid_graph, sio)
sio.seek(0)
graph = from_json_file(sio)
self.help_test_equal(graph)
def process_json_file(file_name):
"""Return a PybelProcessor by processing a Node-Link JSON file.
For more information on this format, see:
http://pybel.readthedocs.io/en/latest/io.html#node-link-json
Parameters
----------
file_name : str
The path to a Node-Link JSON file.
Returns
-------
bp : PybelProcessor
A PybelProcessor object which contains INDRA Statements in
bp.statements.
"""
with open(file_name, 'rt') as fh:
pybel_graph = pybel.from_json_file(fh, False)
return process_pybel_graph(pybel_graph)
def process_json_file(file_name):
"""Return a PybelProcessor by processing a Node-Link JSON file.
For more information on this format, see:
http://pybel.readthedocs.io/en/latest/io.html#node-link-json
Parameters
----------
file_name : str
The path to a Node-Link JSON file.
Returns
-------
bp : PybelProcessor
A PybelProcessor object which contains INDRA Statements in
bp.statements.
"""
with open(file_name, 'rt') as fh:
pybel_graph = pybel.from_json_file(fh, False)
return process_pybel_graph(pybel_graph)
def test_thorough_json_file(self):
sio = StringIO()
to_json_file(self.thorough_graph, sio)
sio.seek(0)
graph = from_json_file(sio)
self.bel_thorough_reconstituted(graph)
def test_thorough_json_file(self):
sio = StringIO()
to_json_file(sialic_acid_graph, sio)
sio.seek(0)
graph = from_json_file(sio)
self.help_test_equal(graph)
